Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0247 and SMa0249 are separated by 0 nucleotides SMa0249 and SMa0250 overlap by 1 nucleotides
SMa0247: SMa0247 - 2-dehydro-3-deoxy-D-arabinonate dehydratase, 2,4-dioxopentanoate forming <small>(from data)</small>, at 137,290 to 138,486
SMa0247
SMa0249: SMa0249 - TRAP-type small permease component, at 138,487 to 139,020
SMa0249
SMa0250: SMa0250 - dedA-like protein, at 139,020 to 140,297
SMa0250
Position (kb) 138
139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.885 kb on - strand, within SMa0247 at 137.885 kb on - strand, within SMa0247 at 137.885 kb on - strand, within SMa0247 at 137.886 kb on + strand, within SMa0247 at 138.048 kb on + strand, within SMa0247 at 138.049 kb on - strand at 138.049 kb on - strand, within SMa0247 at 138.049 kb on - strand, within SMa0247 at 138.484 kb on + strand at 138.484 kb on + strand at 138.485 kb on - strand at 138.485 kb on - strand at 138.485 kb on - strand at 138.511 kb on + strand at 138.512 kb on - strand at 138.634 kb on + strand, within SMa0249 at 138.883 kb on + strand, within SMa0249 at 138.884 kb on - strand, within SMa0249 at 139.018 kb on + strand at 139.018 kb on + strand at 139.019 kb on - strand at 139.120 kb on - strand at 139.136 kb on + strand at 139.256 kb on - strand, within SMa0250 at 139.283 kb on + strand, within SMa0250 at 139.284 kb on - strand, within SMa0250 at 139.285 kb on + strand, within SMa0250 at 139.337 kb on + strand, within SMa0250 at 139.338 kb on - strand, within SMa0250 at 139.338 kb on - strand, within SMa0250 at 139.338 kb on - strand, within SMa0250 at 139.565 kb on + strand, within SMa0250 at 139.565 kb on + strand, within SMa0250 at 139.566 kb on - strand, within SMa0250 at 139.758 kb on + strand, within SMa0250 at 139.759 kb on - strand, within SMa0250 at 139.759 kb on - strand, within SMa0250 at 139.759 kb on - strand, within SMa0250 at 139.759 kb on - strand, within SMa0250 at 139.894 kb on + strand, within SMa0250 at 139.895 kb on - strand, within SMa0250 at 139.908 kb on - strand, within SMa0250 at 139.908 kb on - strand, within SMa0250 at 139.909 kb on + strand, within SMa0250 at 139.909 kb on + strand, within SMa0250 at 139.909 kb on + strand, within SMa0250 at 139.909 kb on + strand, within SMa0250 at 139.909 kb on + strand, within SMa0250 at 139.910 kb on - strand, within SMa0250 at 139.910 kb on - strand, within SMa0250
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 137,884 + SMa0247 0.50 +0.0 137,884 + SMa0247 0.50 +0.1 137,884 + SMa0247 0.50 -0.7 137,884 + SMa0247 0.50 +0.0 137,884 + SMa0247 0.50 -0.0 137,884 + SMa0247 0.50 -0.5 137,884 + SMa0247 0.50 -0.1 137,885 - SMa0247 0.50 -0.1 137,885 - SMa0247 0.50 -0.2 137,885 - SMa0247 0.50 +1.1 137,886 + SMa0247 0.50 -3.1 138,048 + SMa0247 0.63 -0.1 138,049 - +0.5 138,049 - SMa0247 0.63 +0.0 138,049 - SMa0247 0.63 -0.4 138,484 + +1.1 138,484 + +0.1 138,485 - +0.1 138,485 - -0.7 138,485 - +0.2 138,511 + +0.4 138,512 - -0.2 138,634 + SMa0249 0.28 -1.7 138,883 + SMa0249 0.74 -1.0 138,884 - SMa0249 0.74 -0.0 139,018 + -0.5 139,018 + -0.3 139,019 - -0.0 139,120 - -0.3 139,136 + +0.1 139,256 - SMa0250 0.18 +0.6 139,283 + SMa0250 0.21 -1.8 139,284 - SMa0250 0.21 -0.5 139,285 + SMa0250 0.21 +0.5 139,337 + SMa0250 0.25 +0.6 139,338 - SMa0250 0.25 +0.6 139,338 - SMa0250 0.25 +0.6 139,338 - SMa0250 0.25 +0.5 139,565 + SMa0250 0.43 +0.8 139,565 + SMa0250 0.43 +0.3 139,566 - SMa0250 0.43 +0.2 139,758 + SMa0250 0.58 +0.1 139,759 - SMa0250 0.58 -0.2 139,759 - SMa0250 0.58 +0.8 139,759 - SMa0250 0.58 +0.6 139,759 - SMa0250 0.58 -0.2 139,894 + SMa0250 0.68 +0.2 139,895 - SMa0250 0.68 +0.5 139,908 - SMa0250 0.69 +0.1 139,908 - SMa0250 0.69 +0.3 139,909 + SMa0250 0.70 -1.6 139,909 + SMa0250 0.70 +0.3 139,909 + SMa0250 0.70 +0.1 139,909 + SMa0250 0.70 -0.0 139,909 + SMa0250 0.70 +0.0 139,910 - SMa0250 0.70 +0.2 139,910 - SMa0250 0.70 -0.2
Or see this region's nucleotide sequence