Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21588

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21587 and SM_b21588 are separated by 142 nucleotidesSM_b21588 and SM_b21589 overlap by 4 nucleotides SM_b21587: SM_b21587 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,126,895 to 1,127,857 _b21587 SM_b21588: SM_b21588 - sugar uptake ABC transporter ATP-binding protein, at 1,128,000 to 1,129,517 _b21588 SM_b21589: SM_b21589 - sugar uptake ABC transporter permease, at 1,129,514 to 1,130,539 _b21589 Position (kb) 1127 1128 1129 1130Strain fitness (log2 ratio) -1 0 1at 1127.261 kb on + strand, within SM_b21587at 1127.261 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.435 kb on - strand, within SM_b21587at 1127.546 kb on + strand, within SM_b21587at 1127.828 kb on + strandat 1127.828 kb on + strandat 1128.020 kb on + strandat 1128.265 kb on - strand, within SM_b21588at 1128.294 kb on - strand, within SM_b21588at 1128.432 kb on + strand, within SM_b21588at 1128.432 kb on + strand, within SM_b21588at 1128.433 kb on - strand, within SM_b21588at 1128.433 kb on - strand, within SM_b21588at 1128.560 kb on - strand, within SM_b21588at 1128.621 kb on + strand, within SM_b21588at 1129.147 kb on - strand, within SM_b21588at 1129.147 kb on - strand, within SM_b21588at 1129.535 kb on + strandat 1129.535 kb on + strandat 1129.536 kb on - strandat 1129.536 kb on - strandat 1129.643 kb on + strand, within SM_b21589at 1129.644 kb on - strand, within SM_b21589at 1129.651 kb on + strand, within SM_b21589at 1129.651 kb on + strand, within SM_b21589at 1129.965 kb on + strand, within SM_b21589at 1129.966 kb on - strand, within SM_b21589at 1129.966 kb on - strand, within SM_b21589at 1129.966 kb on - strand, within SM_b21589at 1130.174 kb on + strand, within SM_b21589at 1130.174 kb on + strand, within SM_b21589at 1130.175 kb on - strand, within SM_b21589at 1130.175 kb on - strand, within SM_b21589at 1130.259 kb on + strand, within SM_b21589at 1130.259 kb on + strand, within SM_b21589at 1130.260 kb on - strand, within SM_b21589at 1130.260 kb on - strand, within SM_b21589

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,127,261 + SM_b21587 0.38 -0.3
1,127,261 + SM_b21587 0.38 +0.2
1,127,434 + SM_b21587 0.56 -0.8
1,127,434 + SM_b21587 0.56 +1.6
1,127,434 + SM_b21587 0.56 +0.1
1,127,434 + SM_b21587 0.56 +0.1
1,127,435 - SM_b21587 0.56 +0.4
1,127,546 + SM_b21587 0.68 -0.1
1,127,828 + +0.0
1,127,828 + +0.6
1,128,020 + -0.5
1,128,265 - SM_b21588 0.17 +0.0
1,128,294 - SM_b21588 0.19 -0.1
1,128,432 + SM_b21588 0.28 +0.5
1,128,432 + SM_b21588 0.28 +0.8
1,128,433 - SM_b21588 0.29 -0.0
1,128,433 - SM_b21588 0.29 +0.2
1,128,560 - SM_b21588 0.37 +0.7
1,128,621 + SM_b21588 0.41 +0.2
1,129,147 - SM_b21588 0.76 +0.3
1,129,147 - SM_b21588 0.76 +0.5
1,129,535 + -0.2
1,129,535 + -1.0
1,129,536 - +0.2
1,129,536 - -0.1
1,129,643 + SM_b21589 0.13 +0.0
1,129,644 - SM_b21589 0.13 -0.4
1,129,651 + SM_b21589 0.13 -0.5
1,129,651 + SM_b21589 0.13 -0.3
1,129,965 + SM_b21589 0.44 -0.6
1,129,966 - SM_b21589 0.44 -0.5
1,129,966 - SM_b21589 0.44 -0.6
1,129,966 - SM_b21589 0.44 +0.4
1,130,174 + SM_b21589 0.64 +0.4
1,130,174 + SM_b21589 0.64 +0.3
1,130,175 - SM_b21589 0.64 -0.1
1,130,175 - SM_b21589 0.64 -1.6
1,130,259 + SM_b21589 0.73 -1.3
1,130,259 + SM_b21589 0.73 +0.8
1,130,260 - SM_b21589 0.73 +1.2
1,130,260 - SM_b21589 0.73 -0.2

Or see this region's nucleotide sequence