Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21587 and SM_b21588 are separated by 142 nucleotides SM_b21588 and SM_b21589 overlap by 4 nucleotides
SM_b21587: SM_b21587 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,126,895 to 1,127,857
_b21587
SM_b21588: SM_b21588 - sugar uptake ABC transporter ATP-binding protein, at 1,128,000 to 1,129,517
_b21588
SM_b21589: SM_b21589 - sugar uptake ABC transporter permease, at 1,129,514 to 1,130,539
_b21589
Position (kb)
1127
1128
1129
1130 Strain fitness (log2 ratio)
-1
0
1 at 1127.261 kb on + strand, within SM_b21587 at 1127.261 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.435 kb on - strand, within SM_b21587 at 1127.546 kb on + strand, within SM_b21587 at 1127.828 kb on + strand at 1127.828 kb on + strand at 1128.020 kb on + strand at 1128.265 kb on - strand, within SM_b21588 at 1128.294 kb on - strand, within SM_b21588 at 1128.432 kb on + strand, within SM_b21588 at 1128.432 kb on + strand, within SM_b21588 at 1128.433 kb on - strand, within SM_b21588 at 1128.433 kb on - strand, within SM_b21588 at 1128.560 kb on - strand, within SM_b21588 at 1128.621 kb on + strand, within SM_b21588 at 1129.147 kb on - strand, within SM_b21588 at 1129.147 kb on - strand, within SM_b21588 at 1129.535 kb on + strand at 1129.535 kb on + strand at 1129.536 kb on - strand at 1129.536 kb on - strand at 1129.643 kb on + strand, within SM_b21589 at 1129.644 kb on - strand, within SM_b21589 at 1129.651 kb on + strand, within SM_b21589 at 1129.651 kb on + strand, within SM_b21589 at 1129.965 kb on + strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1130.174 kb on + strand, within SM_b21589 at 1130.174 kb on + strand, within SM_b21589 at 1130.175 kb on - strand, within SM_b21589 at 1130.175 kb on - strand, within SM_b21589 at 1130.259 kb on + strand, within SM_b21589 at 1130.259 kb on + strand, within SM_b21589 at 1130.260 kb on - strand, within SM_b21589 at 1130.260 kb on - strand, within SM_b21589
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,127,261 + SM_b21587 0.38 -0.3 1,127,261 + SM_b21587 0.38 +0.2 1,127,434 + SM_b21587 0.56 -0.8 1,127,434 + SM_b21587 0.56 +1.6 1,127,434 + SM_b21587 0.56 +0.1 1,127,434 + SM_b21587 0.56 +0.1 1,127,435 - SM_b21587 0.56 +0.4 1,127,546 + SM_b21587 0.68 -0.1 1,127,828 + +0.0 1,127,828 + +0.6 1,128,020 + -0.5 1,128,265 - SM_b21588 0.17 +0.0 1,128,294 - SM_b21588 0.19 -0.1 1,128,432 + SM_b21588 0.28 +0.5 1,128,432 + SM_b21588 0.28 +0.8 1,128,433 - SM_b21588 0.29 -0.0 1,128,433 - SM_b21588 0.29 +0.2 1,128,560 - SM_b21588 0.37 +0.7 1,128,621 + SM_b21588 0.41 +0.2 1,129,147 - SM_b21588 0.76 +0.3 1,129,147 - SM_b21588 0.76 +0.5 1,129,535 + -0.2 1,129,535 + -1.0 1,129,536 - +0.2 1,129,536 - -0.1 1,129,643 + SM_b21589 0.13 +0.0 1,129,644 - SM_b21589 0.13 -0.4 1,129,651 + SM_b21589 0.13 -0.5 1,129,651 + SM_b21589 0.13 -0.3 1,129,965 + SM_b21589 0.44 -0.6 1,129,966 - SM_b21589 0.44 -0.5 1,129,966 - SM_b21589 0.44 -0.6 1,129,966 - SM_b21589 0.44 +0.4 1,130,174 + SM_b21589 0.64 +0.4 1,130,174 + SM_b21589 0.64 +0.3 1,130,175 - SM_b21589 0.64 -0.1 1,130,175 - SM_b21589 0.64 -1.6 1,130,259 + SM_b21589 0.73 -1.3 1,130,259 + SM_b21589 0.73 +0.8 1,130,260 - SM_b21589 0.73 +1.2 1,130,260 - SM_b21589 0.73 -0.2
Or see this region's nucleotide sequence