Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21512 and SM_b21513 overlap by 4 nucleotides SM_b21513 and SM_b21514 are separated by 123 nucleotides SM_b21514 and SM_b21515 overlap by 4 nucleotides
SM_b21512: SM_b21512 - hypothetical protein, at 1,435,612 to 1,436,760
_b21512
SM_b21513: SM_b21513 - cell-surface polysaccharide exporter protein PST family, at 1,436,757 to 1,438,067
_b21513
SM_b21514: SM_b21514 - modification methylase, at 1,438,191 to 1,439,018
_b21514
SM_b21515: SM_b21515 - hypothetical protein, at 1,439,015 to 1,440,136
_b21515
Position (kb)
1436
1437
1438
1439 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1435.764 kb on + strand, within SM_b21512 at 1435.764 kb on + strand, within SM_b21512 at 1435.765 kb on - strand, within SM_b21512 at 1435.808 kb on + strand at 1436.419 kb on - strand, within SM_b21512 at 1436.419 kb on - strand, within SM_b21512 at 1436.498 kb on - strand, within SM_b21512 at 1436.498 kb on - strand, within SM_b21512 at 1436.509 kb on + strand, within SM_b21512 at 1436.558 kb on + strand, within SM_b21512 at 1436.558 kb on + strand, within SM_b21512 at 1436.558 kb on + strand, within SM_b21512 at 1436.559 kb on - strand, within SM_b21512 at 1436.863 kb on + strand at 1436.897 kb on - strand, within SM_b21513 at 1437.036 kb on + strand, within SM_b21513 at 1437.036 kb on + strand, within SM_b21513 at 1437.037 kb on - strand, within SM_b21513 at 1437.037 kb on - strand, within SM_b21513 at 1437.037 kb on - strand, within SM_b21513 at 1437.068 kb on - strand, within SM_b21513 at 1437.068 kb on - strand, within SM_b21513 at 1437.068 kb on - strand, within SM_b21513 at 1437.165 kb on + strand, within SM_b21513 at 1437.224 kb on + strand, within SM_b21513 at 1437.224 kb on + strand, within SM_b21513 at 1437.253 kb on + strand, within SM_b21513 at 1437.253 kb on + strand, within SM_b21513 at 1437.253 kb on + strand, within SM_b21513 at 1437.254 kb on - strand, within SM_b21513 at 1437.254 kb on - strand, within SM_b21513 at 1437.286 kb on + strand, within SM_b21513 at 1437.286 kb on + strand, within SM_b21513 at 1437.287 kb on - strand, within SM_b21513 at 1437.369 kb on + strand, within SM_b21513 at 1437.370 kb on - strand, within SM_b21513 at 1437.370 kb on - strand, within SM_b21513 at 1437.379 kb on + strand, within SM_b21513 at 1437.379 kb on + strand, within SM_b21513 at 1437.380 kb on - strand, within SM_b21513 at 1437.380 kb on - strand, within SM_b21513 at 1437.416 kb on - strand, within SM_b21513 at 1437.425 kb on + strand, within SM_b21513 at 1437.449 kb on + strand, within SM_b21513 at 1437.450 kb on - strand, within SM_b21513 at 1437.450 kb on - strand, within SM_b21513 at 1437.450 kb on - strand, within SM_b21513 at 1437.612 kb on - strand, within SM_b21513 at 1437.613 kb on + strand, within SM_b21513 at 1437.613 kb on + strand, within SM_b21513 at 1437.613 kb on + strand, within SM_b21513 at 1437.614 kb on - strand, within SM_b21513 at 1437.614 kb on - strand, within SM_b21513 at 1437.653 kb on + strand, within SM_b21513 at 1437.876 kb on + strand, within SM_b21513 at 1437.877 kb on - strand, within SM_b21513 at 1437.877 kb on - strand, within SM_b21513 at 1437.877 kb on - strand, within SM_b21513 at 1437.877 kb on - strand, within SM_b21513 at 1437.893 kb on + strand, within SM_b21513 at 1437.894 kb on - strand, within SM_b21513 at 1437.953 kb on + strand at 1438.003 kb on + strand at 1438.003 kb on + strand at 1438.091 kb on + strand at 1438.092 kb on - strand at 1438.092 kb on - strand at 1438.143 kb on + strand at 1438.152 kb on + strand at 1438.168 kb on + strand at 1438.173 kb on + strand at 1438.173 kb on + strand at 1438.174 kb on - strand at 1438.174 kb on - strand at 1438.238 kb on + strand at 1438.695 kb on + strand, within SM_b21514 at 1438.696 kb on - strand, within SM_b21514 at 1438.698 kb on - strand, within SM_b21514 at 1438.777 kb on - strand, within SM_b21514 at 1438.783 kb on + strand, within SM_b21514 at 1438.783 kb on + strand, within SM_b21514 at 1438.784 kb on - strand, within SM_b21514 at 1438.784 kb on - strand, within SM_b21514 at 1438.909 kb on - strand, within SM_b21514 at 1438.909 kb on - strand, within SM_b21514 at 1438.909 kb on - strand, within SM_b21514 at 1438.909 kb on - strand, within SM_b21514 at 1439.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,435,764 + SM_b21512 0.13 +1.4 1,435,764 + SM_b21512 0.13 -0.2 1,435,765 - SM_b21512 0.13 -1.2 1,435,808 + +1.8 1,436,419 - SM_b21512 0.70 -0.1 1,436,419 - SM_b21512 0.70 -0.2 1,436,498 - SM_b21512 0.77 -0.5 1,436,498 - SM_b21512 0.77 -0.2 1,436,509 + SM_b21512 0.78 -0.3 1,436,558 + SM_b21512 0.82 -0.2 1,436,558 + SM_b21512 0.82 -0.4 1,436,558 + SM_b21512 0.82 +0.1 1,436,559 - SM_b21512 0.82 +0.1 1,436,863 + +0.7 1,436,897 - SM_b21513 0.11 +0.1 1,437,036 + SM_b21513 0.21 -0.7 1,437,036 + SM_b21513 0.21 -0.8 1,437,037 - SM_b21513 0.21 +0.5 1,437,037 - SM_b21513 0.21 -0.4 1,437,037 - SM_b21513 0.21 -0.3 1,437,068 - SM_b21513 0.24 -0.8 1,437,068 - SM_b21513 0.24 +0.0 1,437,068 - SM_b21513 0.24 -0.0 1,437,165 + SM_b21513 0.31 -0.0 1,437,224 + SM_b21513 0.36 -0.0 1,437,224 + SM_b21513 0.36 +3.4 1,437,253 + SM_b21513 0.38 +1.1 1,437,253 + SM_b21513 0.38 +0.1 1,437,253 + SM_b21513 0.38 -0.1 1,437,254 - SM_b21513 0.38 +0.2 1,437,254 - SM_b21513 0.38 -1.3 1,437,286 + SM_b21513 0.40 +0.8 1,437,286 + SM_b21513 0.40 -0.4 1,437,287 - SM_b21513 0.40 +0.5 1,437,369 + SM_b21513 0.47 -0.2 1,437,370 - SM_b21513 0.47 +0.4 1,437,370 - SM_b21513 0.47 -0.3 1,437,379 + SM_b21513 0.47 +0.3 1,437,379 + SM_b21513 0.47 +0.2 1,437,380 - SM_b21513 0.48 -0.0 1,437,380 - SM_b21513 0.48 -0.6 1,437,416 - SM_b21513 0.50 -0.4 1,437,425 + SM_b21513 0.51 -0.1 1,437,449 + SM_b21513 0.53 +0.2 1,437,450 - SM_b21513 0.53 -0.3 1,437,450 - SM_b21513 0.53 -0.9 1,437,450 - SM_b21513 0.53 +0.5 1,437,612 - SM_b21513 0.65 +0.4 1,437,613 + SM_b21513 0.65 -0.1 1,437,613 + SM_b21513 0.65 -0.5 1,437,613 + SM_b21513 0.65 -0.3 1,437,614 - SM_b21513 0.65 +0.7 1,437,614 - SM_b21513 0.65 +0.7 1,437,653 + SM_b21513 0.68 +0.1 1,437,876 + SM_b21513 0.85 -0.7 1,437,877 - SM_b21513 0.85 +0.3 1,437,877 - SM_b21513 0.85 -0.9 1,437,877 - SM_b21513 0.85 -0.8 1,437,877 - SM_b21513 0.85 +0.2 1,437,893 + SM_b21513 0.87 -0.1 1,437,894 - SM_b21513 0.87 +0.2 1,437,953 + +0.2 1,438,003 + +0.6 1,438,003 + +0.3 1,438,091 + -0.1 1,438,092 - +0.6 1,438,092 - +0.6 1,438,143 + +0.8 1,438,152 + +0.1 1,438,168 + -0.3 1,438,173 + -0.1 1,438,173 + +0.3 1,438,174 - +0.1 1,438,174 - +2.4 1,438,238 + -0.3 1,438,695 + SM_b21514 0.61 -0.2 1,438,696 - SM_b21514 0.61 -0.1 1,438,698 - SM_b21514 0.61 +0.6 1,438,777 - SM_b21514 0.71 -0.2 1,438,783 + SM_b21514 0.71 +1.4 1,438,783 + SM_b21514 0.71 +0.1 1,438,784 - SM_b21514 0.72 -0.2 1,438,784 - SM_b21514 0.72 -0.2 1,438,909 - SM_b21514 0.87 -1.3 1,438,909 - SM_b21514 0.87 -0.4 1,438,909 - SM_b21514 0.87 +0.1 1,438,909 - SM_b21514 0.87 +0.0 1,439,047 + +0.1
Or see this region's nucleotide sequence