Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21288 and SM_b21289 overlap by 11 nucleotides SM_b21289 and SM_b21290 overlap by 11 nucleotides SM_b21290 and SM_b21291 are separated by 11 nucleotides
SM_b21288: SM_b21288 - xanthine dehydrogenase, at 864,719 to 865,585
_b21288
SM_b21289: SM_b21289 - protein, may interact with ubiquitin, at 865,575 to 866,078
_b21289
SM_b21290: SM_b21290 - NADPH quinone oxidoreductase, at 866,068 to 867,048
_b21290
SM_b21291: SM_b21291 - LysR family transcriptional regulator, at 867,060 to 868,007
_b21291
Position (kb) 866
867
868 Strain fitness (log2 ratio) -1
0
1 at 865.085 kb on + strand, within SM_b21288 at 865.086 kb on - strand, within SM_b21288 at 865.086 kb on - strand, within SM_b21288 at 865.086 kb on - strand, within SM_b21288 at 865.086 kb on - strand, within SM_b21288 at 865.086 kb on - strand, within SM_b21288 at 865.344 kb on - strand, within SM_b21288 at 865.357 kb on - strand, within SM_b21288 at 865.357 kb on - strand, within SM_b21288 at 865.357 kb on - strand, within SM_b21288 at 865.510 kb on - strand at 865.583 kb on + strand at 865.583 kb on + strand at 865.583 kb on + strand at 865.744 kb on - strand, within SM_b21289 at 865.767 kb on + strand, within SM_b21289 at 865.767 kb on + strand, within SM_b21289 at 865.880 kb on - strand, within SM_b21289 at 865.953 kb on + strand, within SM_b21289 at 865.953 kb on + strand, within SM_b21289 at 865.954 kb on - strand, within SM_b21289 at 865.985 kb on + strand, within SM_b21289 at 865.986 kb on - strand, within SM_b21289 at 865.993 kb on + strand, within SM_b21289 at 866.005 kb on - strand, within SM_b21289 at 866.005 kb on - strand, within SM_b21289 at 866.005 kb on - strand, within SM_b21289 at 866.023 kb on - strand, within SM_b21289 at 866.023 kb on - strand, within SM_b21289 at 866.067 kb on + strand at 866.067 kb on + strand at 866.068 kb on - strand at 866.130 kb on + strand at 866.189 kb on - strand, within SM_b21290 at 866.189 kb on - strand, within SM_b21290 at 866.277 kb on - strand, within SM_b21290 at 866.363 kb on - strand, within SM_b21290 at 866.371 kb on + strand, within SM_b21290 at 866.372 kb on - strand, within SM_b21290 at 866.375 kb on + strand, within SM_b21290 at 866.375 kb on + strand, within SM_b21290 at 866.376 kb on - strand, within SM_b21290 at 866.399 kb on + strand, within SM_b21290 at 866.650 kb on + strand, within SM_b21290 at 866.651 kb on - strand, within SM_b21290 at 866.651 kb on - strand, within SM_b21290 at 866.651 kb on - strand, within SM_b21290 at 866.651 kb on - strand, within SM_b21290 at 866.718 kb on - strand, within SM_b21290 at 866.825 kb on + strand, within SM_b21290 at 866.870 kb on + strand, within SM_b21290 at 867.028 kb on - strand at 867.257 kb on + strand, within SM_b21291 at 867.258 kb on - strand, within SM_b21291 at 867.400 kb on + strand, within SM_b21291 at 867.400 kb on + strand, within SM_b21291 at 867.400 kb on + strand, within SM_b21291 at 867.401 kb on - strand, within SM_b21291 at 867.403 kb on + strand, within SM_b21291 at 867.421 kb on + strand, within SM_b21291 at 867.568 kb on - strand, within SM_b21291 at 867.617 kb on + strand, within SM_b21291 at 867.618 kb on - strand, within SM_b21291 at 867.618 kb on - strand, within SM_b21291 at 867.675 kb on + strand, within SM_b21291 at 867.812 kb on - strand, within SM_b21291 at 867.878 kb on + strand, within SM_b21291 at 868.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 865,085 + SM_b21288 0.42 -1.4 865,086 - SM_b21288 0.42 -0.8 865,086 - SM_b21288 0.42 -0.6 865,086 - SM_b21288 0.42 -0.1 865,086 - SM_b21288 0.42 +0.2 865,086 - SM_b21288 0.42 +0.2 865,344 - SM_b21288 0.72 -0.1 865,357 - SM_b21288 0.74 +0.9 865,357 - SM_b21288 0.74 -0.3 865,357 - SM_b21288 0.74 -0.3 865,510 - +0.4 865,583 + +0.1 865,583 + +0.0 865,583 + -0.3 865,744 - SM_b21289 0.34 -0.2 865,767 + SM_b21289 0.38 -0.2 865,767 + SM_b21289 0.38 +0.3 865,880 - SM_b21289 0.61 +0.2 865,953 + SM_b21289 0.75 -1.0 865,953 + SM_b21289 0.75 -0.1 865,954 - SM_b21289 0.75 +1.2 865,985 + SM_b21289 0.81 +0.0 865,986 - SM_b21289 0.82 +0.5 865,993 + SM_b21289 0.83 -0.2 866,005 - SM_b21289 0.85 -0.1 866,005 - SM_b21289 0.85 +0.4 866,005 - SM_b21289 0.85 +0.7 866,023 - SM_b21289 0.89 -0.3 866,023 - SM_b21289 0.89 -1.2 866,067 + -0.2 866,067 + +0.0 866,068 - -0.6 866,130 + -0.1 866,189 - SM_b21290 0.12 -0.7 866,189 - SM_b21290 0.12 +0.2 866,277 - SM_b21290 0.21 -0.3 866,363 - SM_b21290 0.30 +1.5 866,371 + SM_b21290 0.31 +0.4 866,372 - SM_b21290 0.31 +0.2 866,375 + SM_b21290 0.31 +0.3 866,375 + SM_b21290 0.31 -0.3 866,376 - SM_b21290 0.31 -0.2 866,399 + SM_b21290 0.34 -0.3 866,650 + SM_b21290 0.59 +0.1 866,651 - SM_b21290 0.59 +0.1 866,651 - SM_b21290 0.59 +0.0 866,651 - SM_b21290 0.59 -1.0 866,651 - SM_b21290 0.59 -0.3 866,718 - SM_b21290 0.66 -0.1 866,825 + SM_b21290 0.77 +0.2 866,870 + SM_b21290 0.82 -0.1 867,028 - -0.4 867,257 + SM_b21291 0.21 -0.2 867,258 - SM_b21291 0.21 -0.0 867,400 + SM_b21291 0.36 -0.4 867,400 + SM_b21291 0.36 -0.6 867,400 + SM_b21291 0.36 +0.2 867,401 - SM_b21291 0.36 +0.3 867,403 + SM_b21291 0.36 -0.1 867,421 + SM_b21291 0.38 +0.4 867,568 - SM_b21291 0.54 -0.4 867,617 + SM_b21291 0.59 +0.1 867,618 - SM_b21291 0.59 -0.2 867,618 - SM_b21291 0.59 -0.5 867,675 + SM_b21291 0.65 +0.2 867,812 - SM_b21291 0.79 +0.5 867,878 + SM_b21291 0.86 +0.6 868,038 + -0.4
Or see this region's nucleotide sequence