Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21176 and SM_b21177 are separated by 91 nucleotides SM_b21177 and SM_b21178 are separated by 166 nucleotides
SM_b21176: SM_b21176 - phosphate uptake ABC transporter substrate-binding protein precursor, at 922,274 to 923,179
_b21176
SM_b21177: SM_b21177 - phosphate uptake ABC transporter ATP-binding protein, at 923,271 to 924,110
_b21177
SM_b21178: SM_b21178 - membrane protein, methyltransferase, at 924,277 to 925,530
_b21178
Position (kb) 923
924
925 Strain fitness (log2 ratio) -2
-1
0
1
2 at 922.476 kb on - strand, within SM_b21176 at 922.796 kb on - strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.900 kb on - strand, within SM_b21176 at 922.978 kb on - strand, within SM_b21176 at 923.173 kb on + strand at 923.390 kb on - strand, within SM_b21177 at 923.390 kb on - strand, within SM_b21177 at 923.479 kb on + strand, within SM_b21177 at 923.479 kb on + strand, within SM_b21177 at 923.480 kb on - strand, within SM_b21177 at 923.501 kb on + strand, within SM_b21177 at 923.502 kb on - strand, within SM_b21177 at 923.781 kb on + strand, within SM_b21177 at 923.922 kb on + strand, within SM_b21177 at 923.923 kb on - strand, within SM_b21177 at 923.971 kb on - strand, within SM_b21177 at 924.014 kb on + strand, within SM_b21177 at 924.014 kb on + strand, within SM_b21177 at 924.040 kb on - strand at 924.091 kb on - strand at 924.590 kb on + strand, within SM_b21178 at 924.623 kb on + strand, within SM_b21178 at 924.645 kb on + strand, within SM_b21178 at 924.734 kb on + strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 922,476 - SM_b21176 0.22 -0.3 922,796 - SM_b21176 0.58 -0.4 922,899 + SM_b21176 0.69 -1.6 922,899 + SM_b21176 0.69 +0.1 922,899 + SM_b21176 0.69 -0.5 922,900 - SM_b21176 0.69 -1.5 922,978 - SM_b21176 0.78 +0.7 923,173 + -0.9 923,390 - SM_b21177 0.14 -1.4 923,390 - SM_b21177 0.14 -2.3 923,479 + SM_b21177 0.25 -0.8 923,479 + SM_b21177 0.25 -0.6 923,480 - SM_b21177 0.25 -0.5 923,501 + SM_b21177 0.27 +0.5 923,502 - SM_b21177 0.28 -0.4 923,781 + SM_b21177 0.61 +0.0 923,922 + SM_b21177 0.78 -0.4 923,923 - SM_b21177 0.78 -1.5 923,971 - SM_b21177 0.83 +2.2 924,014 + SM_b21177 0.88 -0.1 924,014 + SM_b21177 0.88 -0.8 924,040 - -0.9 924,091 - +0.0 924,590 + SM_b21178 0.25 -0.2 924,623 + SM_b21178 0.28 -0.5 924,645 + SM_b21178 0.29 -0.8 924,734 + SM_b21178 0.36 -0.7 924,735 - SM_b21178 0.37 +0.0 924,735 - SM_b21178 0.37 -2.4 924,792 - SM_b21178 0.41 -0.2 924,792 - SM_b21178 0.41 -0.6 924,792 - SM_b21178 0.41 +0.5 924,792 - SM_b21178 0.41 -0.1 924,792 - SM_b21178 0.41 -0.8 924,792 - SM_b21178 0.41 -2.2 924,792 - SM_b21178 0.41 -0.7 924,860 + SM_b21178 0.46 -0.9 924,860 + SM_b21178 0.46 +0.3 924,860 + SM_b21178 0.46 -2.7 924,860 + SM_b21178 0.46 -0.1
Or see this region's nucleotide sequence