Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21111 and SM_b21112 are separated by 22 nucleotides SM_b21112 and SM_b21113 are separated by 123 nucleotides SM_b21113 and SM_b21114 are separated by 44 nucleotides
SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953
_b21111
SM_b21112: SM_b21112 - L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase <small>(from data)</small>, at 752,976 to 753,821
_b21112
SM_b21113: SM_b21113 - hypothetical protein, at 753,945 to 755,222
_b21113
SM_b21114: SM_b21114 - nitrate transport protein, at 755,267 to 756,592
_b21114
Position (kb) 753
754
755
756 Strain fitness (log2 ratio) -2
-1
0
1
2 at 752.992 kb on - strand at 753.064 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.384 kb on + strand, within SM_b21112 at 753.385 kb on - strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.628 kb on - strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.687 kb on - strand, within SM_b21112 at 753.776 kb on - strand at 753.824 kb on + strand at 753.824 kb on + strand at 753.825 kb on - strand at 753.932 kb on + strand at 753.932 kb on + strand at 753.933 kb on - strand at 753.933 kb on - strand at 754.039 kb on - strand at 754.050 kb on + strand at 754.050 kb on + strand at 754.051 kb on - strand at 754.051 kb on - strand at 754.051 kb on - strand at 754.108 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.289 kb on - strand, within SM_b21113 at 754.395 kb on + strand, within SM_b21113 at 754.395 kb on + strand, within SM_b21113 at 754.396 kb on - strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.504 kb on - strand, within SM_b21113 at 754.671 kb on + strand, within SM_b21113 at 754.672 kb on - strand, within SM_b21113 at 755.019 kb on + strand, within SM_b21113 at 755.046 kb on + strand, within SM_b21113 at 755.046 kb on + strand, within SM_b21113 at 755.047 kb on - strand, within SM_b21113 at 755.089 kb on - strand, within SM_b21113 at 755.145 kb on + strand at 755.145 kb on + strand at 755.146 kb on - strand at 755.146 kb on - strand at 755.206 kb on - strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.330 kb on - strand at 755.330 kb on - strand at 755.330 kb on - strand at 755.331 kb on + strand at 755.331 kb on + strand at 755.331 kb on + strand at 755.332 kb on - strand at 755.332 kb on - strand at 755.332 kb on - strand at 755.332 kb on - strand at 755.455 kb on - strand, within SM_b21114 at 755.538 kb on + strand, within SM_b21114 at 755.538 kb on + strand, within SM_b21114 at 755.539 kb on - strand, within SM_b21114 at 755.539 kb on - strand, within SM_b21114 at 755.569 kb on - strand, within SM_b21114 at 755.598 kb on + strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.794 kb on + strand, within SM_b21114 at 756.045 kb on + strand, within SM_b21114 at 756.046 kb on - strand, within SM_b21114 at 756.050 kb on - strand, within SM_b21114 at 756.195 kb on + strand, within SM_b21114 at 756.196 kb on - strand, within SM_b21114 at 756.196 kb on - strand, within SM_b21114
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 752,992 - -0.6 753,064 + SM_b21112 0.10 +0.4 753,213 + SM_b21112 0.28 +0.6 753,213 + SM_b21112 0.28 -1.2 753,384 + SM_b21112 0.48 -0.3 753,385 - SM_b21112 0.48 -0.2 753,423 + SM_b21112 0.53 -1.5 753,423 + SM_b21112 0.53 +0.3 753,628 - SM_b21112 0.77 +1.5 753,651 + SM_b21112 0.80 +0.1 753,651 + SM_b21112 0.80 +0.4 753,687 - SM_b21112 0.84 +0.1 753,776 - +0.6 753,824 + +0.4 753,824 + -0.4 753,825 - -0.4 753,932 + +0.6 753,932 + -0.4 753,933 - -1.2 753,933 - -0.5 754,039 - -0.1 754,050 + +0.3 754,050 + +1.0 754,051 - +0.5 754,051 - +0.4 754,051 - +0.6 754,108 + SM_b21113 0.13 -0.8 754,126 + SM_b21113 0.14 -1.1 754,126 + SM_b21113 0.14 -0.4 754,126 + SM_b21113 0.14 +1.2 754,126 + SM_b21113 0.14 -1.0 754,127 - SM_b21113 0.14 -0.7 754,127 - SM_b21113 0.14 -0.8 754,127 - SM_b21113 0.14 -0.3 754,127 - SM_b21113 0.14 -1.4 754,127 - SM_b21113 0.14 -0.4 754,289 - SM_b21113 0.27 +0.2 754,395 + SM_b21113 0.35 +0.2 754,395 + SM_b21113 0.35 +0.4 754,396 - SM_b21113 0.35 +0.0 754,503 + SM_b21113 0.44 -0.6 754,503 + SM_b21113 0.44 +2.5 754,503 + SM_b21113 0.44 -0.4 754,504 - SM_b21113 0.44 -2.2 754,671 + SM_b21113 0.57 -1.8 754,672 - SM_b21113 0.57 -0.4 755,019 + SM_b21113 0.84 -0.0 755,046 + SM_b21113 0.86 -0.1 755,046 + SM_b21113 0.86 -0.9 755,047 - SM_b21113 0.86 -0.4 755,089 - SM_b21113 0.90 -0.4 755,145 + -0.4 755,145 + -0.3 755,146 - +0.2 755,146 - -0.1 755,206 - -0.0 755,329 + +0.0 755,329 + -0.1 755,329 + -0.2 755,329 + -0.3 755,329 + +0.7 755,329 + -0.7 755,330 - +0.0 755,330 - +0.6 755,330 - -0.5 755,331 + -0.1 755,331 + +0.0 755,331 + -0.1 755,332 - -1.0 755,332 - -0.6 755,332 - +0.4 755,332 - -0.7 755,455 - SM_b21114 0.14 +1.0 755,538 + SM_b21114 0.20 -0.0 755,538 + SM_b21114 0.20 -0.4 755,539 - SM_b21114 0.21 -1.6 755,539 - SM_b21114 0.21 -0.3 755,569 - SM_b21114 0.23 +0.2 755,598 + SM_b21114 0.25 -0.3 755,599 - SM_b21114 0.25 +0.4 755,599 - SM_b21114 0.25 -0.3 755,599 - SM_b21114 0.25 -1.1 755,599 - SM_b21114 0.25 -0.2 755,599 - SM_b21114 0.25 -0.6 755,794 + SM_b21114 0.40 +0.6 756,045 + SM_b21114 0.59 -0.9 756,046 - SM_b21114 0.59 +0.6 756,050 - SM_b21114 0.59 +0.3 756,195 + SM_b21114 0.70 +0.2 756,196 - SM_b21114 0.70 +0.1 756,196 - SM_b21114 0.70 -0.2
Or see this region's nucleotide sequence