Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20908 and SM_b21680 are separated by 30 nucleotides SM_b21680 and SM_b21681 are separated by 94 nucleotides SM_b21681 and SM_b20909 are separated by 111 nucleotides SM_b20909 and SM_b20910 are separated by 58 nucleotides SM_b20910 and SM_b20911 are separated by 224 nucleotides SM_b20911 and SM_b20912 are separated by 23 nucleotides
SM_b20908: SM_b20908 - hypothetical protein, at 1,317,788 to 1,318,126
_b20908
SM_b21680: SM_b21680 - hypothetical protein, at 1,318,157 to 1,318,312
_b21680
SM_b21681: SM_b21681 - hypothetical protein, at 1,318,407 to 1,318,583
_b21681
SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988
_b20909
SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355
_b20910
SM_b20911: SM_b20911 - hypothetical protein, at 1,319,580 to 1,319,786
_b20911
SM_b20912: SM_b20912 - ATP-dependent DNA ligase, at 1,319,810 to 1,320,904
_b20912
Position (kb)
1318
1319 Strain fitness (log2 ratio)
-1
0
1
2 at 1317.757 kb on + strand at 1317.758 kb on - strand at 1317.758 kb on - strand at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.981 kb on - strand, within SM_b20908 at 1317.981 kb on - strand, within SM_b20908 at 1318.002 kb on + strand, within SM_b20908 at 1318.003 kb on - strand, within SM_b20908 at 1318.003 kb on - strand, within SM_b20908 at 1318.064 kb on + strand, within SM_b20908 at 1318.065 kb on - strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.072 kb on - strand, within SM_b20908 at 1318.072 kb on - strand, within SM_b20908 at 1318.145 kb on + strand at 1318.178 kb on - strand, within SM_b21680 at 1318.237 kb on + strand, within SM_b21680 at 1318.237 kb on + strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.400 kb on + strand at 1318.453 kb on + strand, within SM_b21681 at 1318.453 kb on + strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.581 kb on + strand at 1318.718 kb on + strand at 1318.826 kb on + strand, within SM_b20909 at 1318.827 kb on - strand, within SM_b20909 at 1318.963 kb on + strand at 1318.963 kb on + strand at 1318.964 kb on - strand at 1319.022 kb on + strand at 1319.027 kb on + strand at 1319.048 kb on + strand at 1319.130 kb on + strand, within SM_b20910 at 1319.131 kb on - strand, within SM_b20910 at 1319.131 kb on - strand, within SM_b20910 at 1319.178 kb on + strand, within SM_b20910 at 1319.178 kb on + strand, within SM_b20910 at 1319.179 kb on - strand, within SM_b20910 at 1319.254 kb on + strand, within SM_b20910 at 1319.269 kb on + strand, within SM_b20910 at 1319.270 kb on - strand, within SM_b20910 at 1319.270 kb on - strand, within SM_b20910 at 1319.416 kb on + strand at 1319.419 kb on - strand at 1319.419 kb on - strand at 1319.419 kb on - strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.428 kb on + strand at 1319.428 kb on + strand at 1319.429 kb on - strand at 1319.429 kb on - strand at 1319.432 kb on + strand at 1319.432 kb on + strand at 1319.432 kb on + strand at 1319.433 kb on - strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.600 kb on - strand at 1319.664 kb on + strand, within SM_b20911 at 1319.664 kb on + strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.666 kb on + strand, within SM_b20911 at 1319.666 kb on + strand, within SM_b20911 at 1319.667 kb on - strand, within SM_b20911 at 1319.667 kb on - strand, within SM_b20911 at 1319.695 kb on + strand, within SM_b20911 at 1319.696 kb on - strand, within SM_b20911 at 1319.696 kb on - strand, within SM_b20911 at 1319.762 kb on + strand, within SM_b20911 at 1319.763 kb on - strand, within SM_b20911 at 1319.931 kb on - strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,317,757 + -0.4 1,317,758 - -0.2 1,317,758 - -0.2 1,317,980 + SM_b20908 0.57 +0.6 1,317,980 + SM_b20908 0.57 -0.1 1,317,980 + SM_b20908 0.57 -0.3 1,317,980 + SM_b20908 0.57 +0.2 1,317,981 - SM_b20908 0.57 -0.0 1,317,981 - SM_b20908 0.57 -0.0 1,318,002 + SM_b20908 0.63 +0.1 1,318,003 - SM_b20908 0.63 -0.7 1,318,003 - SM_b20908 0.63 +0.6 1,318,064 + SM_b20908 0.81 -0.3 1,318,065 - SM_b20908 0.82 +0.4 1,318,071 + SM_b20908 0.83 +0.7 1,318,071 + SM_b20908 0.83 +0.7 1,318,071 + SM_b20908 0.83 -0.1 1,318,071 + SM_b20908 0.83 +0.1 1,318,072 - SM_b20908 0.84 -0.2 1,318,072 - SM_b20908 0.84 -0.2 1,318,145 + -0.5 1,318,178 - SM_b21680 0.13 +0.7 1,318,237 + SM_b21680 0.51 +1.0 1,318,237 + SM_b21680 0.51 -1.1 1,318,238 - SM_b21680 0.52 -0.2 1,318,238 - SM_b21680 0.52 +0.1 1,318,238 - SM_b21680 0.52 -0.5 1,318,238 - SM_b21680 0.52 -0.1 1,318,238 - SM_b21680 0.52 -0.0 1,318,239 + SM_b21680 0.53 +0.1 1,318,239 + SM_b21680 0.53 -0.5 1,318,239 + SM_b21680 0.53 +0.5 1,318,239 + SM_b21680 0.53 +0.9 1,318,240 - SM_b21680 0.53 +0.0 1,318,240 - SM_b21680 0.53 -0.2 1,318,240 - SM_b21680 0.53 -0.2 1,318,240 - SM_b21680 0.53 -0.4 1,318,240 - SM_b21680 0.53 -0.7 1,318,400 + -0.5 1,318,453 + SM_b21681 0.26 -0.3 1,318,453 + SM_b21681 0.26 +0.3 1,318,454 - SM_b21681 0.27 +0.7 1,318,454 - SM_b21681 0.27 +0.0 1,318,454 - SM_b21681 0.27 +0.5 1,318,454 - SM_b21681 0.27 +1.0 1,318,454 - SM_b21681 0.27 +0.5 1,318,454 - SM_b21681 0.27 -0.5 1,318,581 + +0.1 1,318,718 + -0.1 1,318,826 + SM_b20909 0.45 -0.6 1,318,827 - SM_b20909 0.45 -0.1 1,318,963 + +0.2 1,318,963 + -0.1 1,318,964 - -0.2 1,319,022 + +0.3 1,319,027 + +0.5 1,319,048 + +0.3 1,319,130 + SM_b20910 0.27 -0.2 1,319,131 - SM_b20910 0.27 -0.0 1,319,131 - SM_b20910 0.27 +0.9 1,319,178 + SM_b20910 0.42 -1.5 1,319,178 + SM_b20910 0.42 +0.2 1,319,179 - SM_b20910 0.43 +0.1 1,319,254 + SM_b20910 0.67 +0.4 1,319,269 + SM_b20910 0.72 +0.2 1,319,270 - SM_b20910 0.72 -0.6 1,319,270 - SM_b20910 0.72 -0.2 1,319,416 + -0.3 1,319,419 - +0.2 1,319,419 - +0.1 1,319,419 - +0.7 1,319,422 + -1.3 1,319,422 + -0.3 1,319,422 + -0.3 1,319,422 + +0.1 1,319,422 + -0.7 1,319,423 - -0.1 1,319,423 - -0.0 1,319,423 - +0.3 1,319,423 - -0.5 1,319,423 - +1.6 1,319,428 + -0.4 1,319,428 + +0.6 1,319,429 - +0.1 1,319,429 - -0.2 1,319,432 + -0.1 1,319,432 + -0.7 1,319,432 + -0.7 1,319,433 - +0.7 1,319,599 + +0.0 1,319,599 + +0.5 1,319,599 + +0.4 1,319,599 + -0.4 1,319,600 - +0.1 1,319,664 + SM_b20911 0.41 +0.1 1,319,664 + SM_b20911 0.41 +0.1 1,319,665 - SM_b20911 0.41 +1.9 1,319,665 - SM_b20911 0.41 -0.1 1,319,665 - SM_b20911 0.41 -0.3 1,319,665 - SM_b20911 0.41 -0.6 1,319,666 + SM_b20911 0.42 +0.0 1,319,666 + SM_b20911 0.42 -0.5 1,319,667 - SM_b20911 0.42 -0.3 1,319,667 - SM_b20911 0.42 -0.2 1,319,695 + SM_b20911 0.56 +0.3 1,319,696 - SM_b20911 0.56 +0.1 1,319,696 - SM_b20911 0.56 -0.2 1,319,762 + SM_b20911 0.88 -0.1 1,319,763 - SM_b20911 0.88 +0.4 1,319,931 - SM_b20912 0.11 +0.4 1,319,945 + SM_b20912 0.12 +0.1 1,319,945 + SM_b20912 0.12 -0.6
Or see this region's nucleotide sequence