Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20687

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20685 and SM_b20686 are separated by 92 nucleotidesSM_b20686 and SM_b20687 overlap by 1 nucleotidesSM_b20687 and SM_b20688 are separated by 1 nucleotidesSM_b20688 and SM_b20689 are separated by 7 nucleotides SM_b20685: SM_b20685 - hypothetical protein, at 1,487,278 to 1,489,734 _b20685 SM_b20686: SM_b20686 - ATP-dependent DNA ligase, at 1,489,827 to 1,490,711 _b20686 SM_b20687: SM_b20687 - hypothetical protein, at 1,490,711 to 1,491,796 _b20687 SM_b20688: SM_b20688 - hypothetical protein, at 1,491,798 to 1,492,439 _b20688 SM_b20689: SM_b20689 - exodeoxyribonuclease III protein, at 1,492,447 to 1,493,220 _b20689 Position (kb) 1490 1491 1492Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1489.725 kb on + strandat 1489.726 kb on - strandat 1489.727 kb on + strandat 1489.727 kb on + strandat 1489.728 kb on - strandat 1489.728 kb on - strandat 1489.728 kb on - strandat 1489.732 kb on + strandat 1489.733 kb on - strandat 1489.805 kb on - strandat 1489.805 kb on - strandat 1489.854 kb on + strandat 1489.855 kb on - strandat 1489.855 kb on - strandat 1489.855 kb on - strandat 1489.856 kb on + strandat 1489.894 kb on - strandat 1490.028 kb on + strand, within SM_b20686at 1490.043 kb on + strand, within SM_b20686at 1490.043 kb on + strand, within SM_b20686at 1490.043 kb on + strand, within SM_b20686at 1490.043 kb on + strand, within SM_b20686at 1490.044 kb on - strand, within SM_b20686at 1490.145 kb on + strand, within SM_b20686at 1490.146 kb on - strand, within SM_b20686at 1490.160 kb on + strand, within SM_b20686at 1490.160 kb on + strand, within SM_b20686at 1490.160 kb on + strand, within SM_b20686at 1490.161 kb on - strand, within SM_b20686at 1490.161 kb on - strand, within SM_b20686at 1490.164 kb on - strand, within SM_b20686at 1490.164 kb on - strand, within SM_b20686at 1490.358 kb on + strand, within SM_b20686at 1490.358 kb on + strand, within SM_b20686at 1490.469 kb on + strand, within SM_b20686at 1490.677 kb on + strandat 1490.678 kb on - strandat 1490.993 kb on - strand, within SM_b20687at 1491.239 kb on + strand, within SM_b20687at 1491.239 kb on + strand, within SM_b20687at 1491.239 kb on + strand, within SM_b20687at 1491.386 kb on + strand, within SM_b20687at 1491.489 kb on - strand, within SM_b20687at 1491.489 kb on - strand, within SM_b20687at 1491.702 kb on - strandat 1491.702 kb on - strandat 1491.954 kb on + strand, within SM_b20688at 1491.954 kb on + strand, within SM_b20688at 1491.957 kb on - strand, within SM_b20688at 1491.957 kb on - strand, within SM_b20688at 1492.018 kb on + strand, within SM_b20688at 1492.023 kb on + strand, within SM_b20688at 1492.211 kb on + strand, within SM_b20688at 1492.309 kb on - strand, within SM_b20688at 1492.600 kb on + strand, within SM_b20689at 1492.708 kb on - strand, within SM_b20689at 1492.763 kb on - strand, within SM_b20689

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,489,725 + +0.6
1,489,726 - +3.0
1,489,727 + +1.3
1,489,727 + +0.3
1,489,728 - +0.2
1,489,728 - -0.4
1,489,728 - -0.9
1,489,732 + +0.1
1,489,733 - +0.3
1,489,805 - -0.1
1,489,805 - +0.5
1,489,854 + -0.9
1,489,855 - +0.1
1,489,855 - -0.8
1,489,855 - +0.2
1,489,856 + -0.1
1,489,894 - -1.8
1,490,028 + SM_b20686 0.23 -0.1
1,490,043 + SM_b20686 0.24 +0.4
1,490,043 + SM_b20686 0.24 -0.2
1,490,043 + SM_b20686 0.24 +0.4
1,490,043 + SM_b20686 0.24 -0.8
1,490,044 - SM_b20686 0.25 -1.2
1,490,145 + SM_b20686 0.36 -0.2
1,490,146 - SM_b20686 0.36 -0.5
1,490,160 + SM_b20686 0.38 +0.5
1,490,160 + SM_b20686 0.38 -0.4
1,490,160 + SM_b20686 0.38 +0.0
1,490,161 - SM_b20686 0.38 +0.0
1,490,161 - SM_b20686 0.38 +0.2
1,490,164 - SM_b20686 0.38 -0.3
1,490,164 - SM_b20686 0.38 -0.4
1,490,358 + SM_b20686 0.60 +1.4
1,490,358 + SM_b20686 0.60 -0.2
1,490,469 + SM_b20686 0.73 +0.8
1,490,677 + -0.4
1,490,678 - -0.0
1,490,993 - SM_b20687 0.26 -0.6
1,491,239 + SM_b20687 0.49 -0.5
1,491,239 + SM_b20687 0.49 -2.2
1,491,239 + SM_b20687 0.49 -0.5
1,491,386 + SM_b20687 0.62 +0.3
1,491,489 - SM_b20687 0.72 -1.2
1,491,489 - SM_b20687 0.72 -2.3
1,491,702 - +0.4
1,491,702 - -0.4
1,491,954 + SM_b20688 0.24 -0.2
1,491,954 + SM_b20688 0.24 +2.8
1,491,957 - SM_b20688 0.25 -0.1
1,491,957 - SM_b20688 0.25 -0.1
1,492,018 + SM_b20688 0.34 -0.1
1,492,023 + SM_b20688 0.35 -0.4
1,492,211 + SM_b20688 0.64 +3.0
1,492,309 - SM_b20688 0.80 -0.3
1,492,600 + SM_b20689 0.20 +0.1
1,492,708 - SM_b20689 0.34 -0.8
1,492,763 - SM_b20689 0.41 -2.1

Or see this region's nucleotide sequence