Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20424 and SM_b20425 are separated by 163 nucleotides SM_b20425 and SM_b20426 are separated by 209 nucleotides SM_b20426 and SM_b20427 are separated by 170 nucleotides
SM_b20424: SM_b20424 - succinate-semialdehyde dehydrogenase, at 438,630 to 440,126
_b20424
SM_b20425: SM_b20425 - transcriptional regulator, at 440,290 to 440,784
_b20425
SM_b20426: SM_b20426 - transcriptional regulator, at 440,994 to 442,274
_b20426
SM_b20427: SM_b20427 - amino acid ABC transporter ATP-binding protein, at 442,445 to 443,230
_b20427
Position (kb) 440
441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.009 kb on + strand at 440.044 kb on + strand at 440.045 kb on - strand at 440.126 kb on + strand at 440.127 kb on - strand at 440.245 kb on + strand at 440.246 kb on - strand at 440.275 kb on + strand at 440.276 kb on - strand at 440.291 kb on + strand at 440.372 kb on + strand, within SM_b20425 at 440.373 kb on - strand, within SM_b20425 at 440.373 kb on - strand, within SM_b20425 at 440.381 kb on + strand, within SM_b20425 at 440.466 kb on + strand, within SM_b20425 at 440.466 kb on + strand, within SM_b20425 at 440.467 kb on - strand, within SM_b20425 at 440.467 kb on - strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.728 kb on - strand, within SM_b20425 at 440.785 kb on + strand at 440.785 kb on + strand at 440.804 kb on + strand at 441.088 kb on + strand at 441.088 kb on + strand at 441.088 kb on + strand at 441.154 kb on - strand, within SM_b20426 at 441.154 kb on - strand, within SM_b20426 at 441.205 kb on + strand, within SM_b20426 at 441.205 kb on + strand, within SM_b20426 at 441.216 kb on + strand, within SM_b20426 at 441.216 kb on + strand, within SM_b20426 at 441.216 kb on + strand, within SM_b20426 at 441.217 kb on - strand, within SM_b20426 at 441.371 kb on - strand, within SM_b20426 at 441.473 kb on + strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.495 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.819 kb on + strand, within SM_b20426 at 442.653 kb on - strand, within SM_b20427 at 442.759 kb on + strand, within SM_b20427 at 442.760 kb on - strand, within SM_b20427 at 443.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 440,009 + +0.1 440,044 + +0.6 440,045 - +0.4 440,126 + +0.7 440,127 - +0.1 440,245 + +0.1 440,246 - +0.4 440,275 + -0.1 440,276 - -0.1 440,291 + -1.1 440,372 + SM_b20425 0.17 -0.8 440,373 - SM_b20425 0.17 +0.0 440,373 - SM_b20425 0.17 -0.4 440,381 + SM_b20425 0.18 +0.5 440,466 + SM_b20425 0.36 -0.6 440,466 + SM_b20425 0.36 +0.4 440,467 - SM_b20425 0.36 -0.1 440,467 - SM_b20425 0.36 +0.9 440,468 + SM_b20425 0.36 +0.3 440,468 + SM_b20425 0.36 -0.7 440,468 + SM_b20425 0.36 +0.2 440,468 + SM_b20425 0.36 +0.1 440,469 - SM_b20425 0.36 -0.5 440,469 - SM_b20425 0.36 +0.0 440,469 - SM_b20425 0.36 +0.2 440,728 - SM_b20425 0.88 +0.2 440,785 + -3.2 440,785 + +0.0 440,804 + +1.0 441,088 + -0.1 441,088 + -0.2 441,088 + -0.2 441,154 - SM_b20426 0.12 +2.3 441,154 - SM_b20426 0.12 -1.1 441,205 + SM_b20426 0.16 +0.1 441,205 + SM_b20426 0.16 -0.7 441,216 + SM_b20426 0.17 +0.7 441,216 + SM_b20426 0.17 -1.2 441,216 + SM_b20426 0.17 -0.1 441,217 - SM_b20426 0.17 -0.4 441,371 - SM_b20426 0.29 -0.4 441,473 + SM_b20426 0.37 -0.7 441,474 - SM_b20426 0.37 -0.0 441,474 - SM_b20426 0.37 +1.2 441,474 - SM_b20426 0.37 -0.1 441,495 + SM_b20426 0.39 -0.6 441,771 + SM_b20426 0.61 +0.2 441,771 + SM_b20426 0.61 -0.2 441,771 + SM_b20426 0.61 -0.3 441,819 + SM_b20426 0.64 -0.9 442,653 - SM_b20427 0.26 +0.1 442,759 + SM_b20427 0.40 -0.2 442,760 - SM_b20427 0.40 +0.1 443,228 + +0.6
Or see this region's nucleotide sequence