Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20304 and SM_b20306 overlap by 357 nucleotides SM_b20306 and SM_b20305 overlap by 73 nucleotides SM_b20305 and SM_b20307 are separated by 92 nucleotides SM_b20307 and SM_b20312 are separated by 78 nucleotides
SM_b20304: SM_b20304 - ISRm2011-2 transposase, C-terminal portion, at 310,762 to 311,358
_b20304
SM_b20306: SM_b20306 - TRm2011-2 protein, at 311,002 to 311,373
_b20306
SM_b20305: SM_b20305 - ISRm2011-2 transposase, N-terminal portion, at 311,301 to 311,708
_b20305
SM_b20307: SM_b20307 - dihydroxyacetone kinase, at 311,801 to 312,448
_b20307
SM_b20312: SM_b20312 - dihydroxyacetone kinase, at 312,527 to 314,614
_b20312
Position (kb) 311
312
313 Strain fitness (log2 ratio) -1
0
1
2 at 311.933 kb on - strand, within SM_b20307 at 312.528 kb on + strand at 312.639 kb on + strand at 312.713 kb on - strand at 312.714 kb on + strand at 312.714 kb on + strand at 312.714 kb on + strand at 312.715 kb on - strand at 312.715 kb on - strand at 312.715 kb on - strand at 312.715 kb on - strand at 312.967 kb on + strand, within SM_b20312 at 312.967 kb on + strand, within SM_b20312 at 312.969 kb on + strand, within SM_b20312 at 312.970 kb on - strand, within SM_b20312 at 313.143 kb on - strand, within SM_b20312 at 313.143 kb on - strand, within SM_b20312 at 313.336 kb on - strand, within SM_b20312 at 313.336 kb on - strand, within SM_b20312
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 311,933 - SM_b20307 0.20 -1.7 312,528 + +0.5 312,639 + -0.0 312,713 - +0.3 312,714 + -1.1 312,714 + -0.1 312,714 + +2.3 312,715 - -0.3 312,715 - +0.3 312,715 - +0.3 312,715 - +0.8 312,967 + SM_b20312 0.21 -0.1 312,967 + SM_b20312 0.21 -0.3 312,969 + SM_b20312 0.21 -0.3 312,970 - SM_b20312 0.21 +0.8 313,143 - SM_b20312 0.30 -0.2 313,143 - SM_b20312 0.30 -0.3 313,336 - SM_b20312 0.39 +0.9 313,336 - SM_b20312 0.39 +0.9
Or see this region's nucleotide sequence