Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20295 and SM_b20296 are separated by 55 nucleotides SM_b20296 and SM_b20297 are separated by 0 nucleotides
SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895
_b20295
SM_b20296: SM_b20296 - permease, at 302,951 to 303,469
_b20296
SM_b20297: SM_b20297 - permease, at 303,470 to 304,750
_b20297
Position (kb) 302
303
304 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.022 kb on + strand, within SM_b20295 at 302.130 kb on + strand, within SM_b20295 at 302.242 kb on + strand, within SM_b20295 at 302.243 kb on - strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.833 kb on + strand at 303.176 kb on - strand, within SM_b20296 at 303.267 kb on - strand, within SM_b20296 at 303.267 kb on - strand, within SM_b20296 at 303.269 kb on + strand, within SM_b20296 at 303.270 kb on - strand, within SM_b20296 at 303.270 kb on - strand, within SM_b20296 at 303.461 kb on + strand at 303.462 kb on - strand at 303.462 kb on - strand at 303.467 kb on + strand at 303.468 kb on - strand at 303.554 kb on + strand at 303.555 kb on - strand at 303.725 kb on - strand, within SM_b20297 at 303.725 kb on - strand, within SM_b20297 at 303.897 kb on + strand, within SM_b20297 at 303.898 kb on - strand, within SM_b20297 at 303.935 kb on + strand, within SM_b20297 at 303.952 kb on + strand, within SM_b20297 at 303.953 kb on - strand, within SM_b20297 at 304.028 kb on + strand, within SM_b20297 at 304.029 kb on - strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.283 kb on - strand, within SM_b20297 at 304.350 kb on + strand, within SM_b20297 at 304.351 kb on - strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.383 kb on - strand, within SM_b20297
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 302,022 + SM_b20295 0.10 -0.1 302,130 + SM_b20295 0.21 +0.0 302,242 + SM_b20295 0.33 -0.1 302,243 - SM_b20295 0.33 +0.0 302,451 + SM_b20295 0.54 +0.1 302,451 + SM_b20295 0.54 +0.3 302,452 - SM_b20295 0.54 -0.1 302,452 - SM_b20295 0.54 +0.0 302,452 - SM_b20295 0.54 -0.5 302,506 + SM_b20295 0.60 +0.1 302,506 + SM_b20295 0.60 -0.3 302,506 + SM_b20295 0.60 -0.4 302,507 - SM_b20295 0.60 +0.6 302,507 - SM_b20295 0.60 -2.1 302,833 + +0.3 303,176 - SM_b20296 0.43 -0.6 303,267 - SM_b20296 0.61 -0.1 303,267 - SM_b20296 0.61 -0.5 303,269 + SM_b20296 0.61 -0.5 303,270 - SM_b20296 0.61 -1.2 303,270 - SM_b20296 0.61 -1.4 303,461 + +0.8 303,462 - +0.4 303,462 - +0.3 303,467 + -1.2 303,468 - +0.3 303,554 + -0.2 303,555 - -1.8 303,725 - SM_b20297 0.20 -0.1 303,725 - SM_b20297 0.20 -1.7 303,897 + SM_b20297 0.33 -1.1 303,898 - SM_b20297 0.33 +0.8 303,935 + SM_b20297 0.36 -0.2 303,952 + SM_b20297 0.38 +0.2 303,953 - SM_b20297 0.38 +0.2 304,028 + SM_b20297 0.44 -0.1 304,029 - SM_b20297 0.44 -0.7 304,052 + SM_b20297 0.45 -0.5 304,052 + SM_b20297 0.45 +0.3 304,052 + SM_b20297 0.45 +0.3 304,052 + SM_b20297 0.45 +0.5 304,052 + SM_b20297 0.45 -0.3 304,053 - SM_b20297 0.46 +0.8 304,053 - SM_b20297 0.46 -0.1 304,053 - SM_b20297 0.46 -1.0 304,283 - SM_b20297 0.63 +0.2 304,350 + SM_b20297 0.69 -0.1 304,351 - SM_b20297 0.69 -0.3 304,382 + SM_b20297 0.71 +2.7 304,382 + SM_b20297 0.71 +0.3 304,382 + SM_b20297 0.71 -0.0 304,383 - SM_b20297 0.71 +0.3
Or see this region's nucleotide sequence