Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20226 and SM_b20227 are separated by 156 nucleotides SM_b20227 and SM_b20228 overlap by 8 nucleotides SM_b20228 and SM_b20229 overlap by 4 nucleotides
SM_b20226: SM_b20226 - hypothetical protein, at 232,509 to 232,682
_b20226
SM_b20227: SM_b20227 - nutrient deprivation-induced protein, at 232,839 to 233,417
_b20227
SM_b20228: SM_b20228 - nutrient deprivation-induced protein, at 233,410 to 233,829
_b20228
SM_b20229: SM_b20229 - nutrient deprivation-induced protein, at 233,826 to 234,800
_b20229
Position (kb) 233
234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.502 kb on + strand at 232.503 kb on - strand at 232.521 kb on + strand at 232.522 kb on - strand at 232.559 kb on - strand, within SM_b20226 at 232.650 kb on + strand, within SM_b20226 at 232.778 kb on - strand at 232.919 kb on - strand, within SM_b20227 at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.407 kb on - strand at 233.407 kb on - strand at 233.415 kb on + strand at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.617 kb on + strand, within SM_b20228 at 233.749 kb on - strand, within SM_b20228 at 234.130 kb on - strand, within SM_b20229 at 234.130 kb on - strand, within SM_b20229 at 234.198 kb on + strand, within SM_b20229 at 234.298 kb on - strand, within SM_b20229 at 234.298 kb on - strand, within SM_b20229 at 234.308 kb on + strand, within SM_b20229 at 234.309 kb on - strand, within SM_b20229 at 234.309 kb on - strand, within SM_b20229 at 234.338 kb on + strand, within SM_b20229 at 234.339 kb on - strand, within SM_b20229 at 234.593 kb on - strand, within SM_b20229
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 232,502 + +0.0 232,503 - -0.0 232,521 + -0.1 232,522 - -0.4 232,559 - SM_b20226 0.29 +0.0 232,650 + SM_b20226 0.81 -0.8 232,778 - +1.3 232,919 - SM_b20227 0.14 +1.8 233,406 + -0.2 233,406 + +0.6 233,406 + -0.5 233,406 + -0.7 233,407 - -0.5 233,407 - -0.1 233,415 + -0.2 233,469 + SM_b20228 0.14 +0.9 233,469 + SM_b20228 0.14 +0.1 233,469 + SM_b20228 0.14 -0.4 233,471 + SM_b20228 0.15 -0.7 233,471 + SM_b20228 0.15 +0.4 233,472 - SM_b20228 0.15 +0.2 233,472 - SM_b20228 0.15 -0.1 233,617 + SM_b20228 0.49 -1.9 233,749 - SM_b20228 0.81 +0.2 234,130 - SM_b20229 0.31 -0.2 234,130 - SM_b20229 0.31 -0.4 234,198 + SM_b20229 0.38 -0.0 234,298 - SM_b20229 0.48 +0.2 234,298 - SM_b20229 0.48 +0.6 234,308 + SM_b20229 0.49 -0.6 234,309 - SM_b20229 0.50 +0.1 234,309 - SM_b20229 0.50 -0.2 234,338 + SM_b20229 0.53 -0.1 234,339 - SM_b20229 0.53 -0.1 234,593 - SM_b20229 0.79 +0.3
Or see this region's nucleotide sequence