Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20157 and SM_b20158 are separated by 28 nucleotides SM_b20158 and SM_b20159 are separated by 53 nucleotides
SM_b20157: SM_b20157 - ABC transporter substrate-binding protein, at 175,274 to 176,398
_b20157
SM_b20158: SM_b20158 - ABC transporter substrate-binding protein, at 176,427 to 177,551
_b20158
SM_b20159: SM_b20159 - inositol monophosphatase, at 177,605 to 178,489
_b20159
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 175.470 kb on - strand, within SM_b20157 at 175.712 kb on + strand, within SM_b20157 at 175.713 kb on - strand, within SM_b20157 at 175.717 kb on + strand, within SM_b20157 at 175.750 kb on + strand, within SM_b20157 at 175.751 kb on - strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.821 kb on - strand, within SM_b20157 at 175.821 kb on - strand, within SM_b20157 at 175.877 kb on + strand, within SM_b20157 at 175.889 kb on + strand at 176.318 kb on + strand at 176.432 kb on + strand at 176.571 kb on + strand, within SM_b20158 at 176.571 kb on + strand, within SM_b20158 at 176.572 kb on - strand, within SM_b20158 at 176.572 kb on - strand, within SM_b20158 at 176.572 kb on - strand, within SM_b20158 at 176.623 kb on - strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.865 kb on + strand, within SM_b20158 at 176.880 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.973 kb on + strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.975 kb on + strand, within SM_b20158 at 177.231 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.348 kb on - strand, within SM_b20158 at 177.752 kb on + strand, within SM_b20159 at 177.753 kb on - strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.778 kb on - strand, within SM_b20159 at 177.820 kb on + strand, within SM_b20159 at 177.821 kb on - strand, within SM_b20159 at 178.002 kb on - strand, within SM_b20159 at 178.338 kb on - strand, within SM_b20159 at 178.397 kb on + strand, within SM_b20159
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 175,470 - SM_b20157 0.17 -0.3 175,712 + SM_b20157 0.39 -0.7 175,713 - SM_b20157 0.39 +0.3 175,717 + SM_b20157 0.39 -3.0 175,750 + SM_b20157 0.42 +0.2 175,751 - SM_b20157 0.42 -0.9 175,820 + SM_b20157 0.49 +0.7 175,820 + SM_b20157 0.49 +1.1 175,820 + SM_b20157 0.49 +0.2 175,820 + SM_b20157 0.49 -0.5 175,821 - SM_b20157 0.49 +0.2 175,821 - SM_b20157 0.49 -0.3 175,877 + SM_b20157 0.54 -0.5 175,889 + -1.1 176,318 + -0.6 176,432 + -0.3 176,571 + SM_b20158 0.13 -0.1 176,571 + SM_b20158 0.13 +0.1 176,572 - SM_b20158 0.13 +0.7 176,572 - SM_b20158 0.13 -2.2 176,572 - SM_b20158 0.13 -0.5 176,623 - SM_b20158 0.17 -0.0 176,781 + SM_b20158 0.31 +0.4 176,781 + SM_b20158 0.31 -0.0 176,781 + SM_b20158 0.31 +0.0 176,782 - SM_b20158 0.32 +0.1 176,782 - SM_b20158 0.32 +0.5 176,782 - SM_b20158 0.32 -0.1 176,865 + SM_b20158 0.39 +0.3 176,880 + SM_b20158 0.40 -0.6 176,905 + SM_b20158 0.42 +0.2 176,905 + SM_b20158 0.42 +1.4 176,905 + SM_b20158 0.42 -0.2 176,973 + SM_b20158 0.49 +0.1 176,974 - SM_b20158 0.49 +0.4 176,974 - SM_b20158 0.49 +0.3 176,975 + SM_b20158 0.49 +0.3 177,231 + SM_b20158 0.71 +0.7 177,279 + SM_b20158 0.76 -0.5 177,279 + SM_b20158 0.76 +0.2 177,280 - SM_b20158 0.76 -0.8 177,280 - SM_b20158 0.76 +0.1 177,280 - SM_b20158 0.76 +0.2 177,280 - SM_b20158 0.76 -0.1 177,345 + SM_b20158 0.82 +0.5 177,345 + SM_b20158 0.82 +0.4 177,345 + SM_b20158 0.82 +0.3 177,346 - SM_b20158 0.82 +0.1 177,346 - SM_b20158 0.82 +0.0 177,348 - SM_b20158 0.82 +0.4 177,752 + SM_b20159 0.17 +0.3 177,753 - SM_b20159 0.17 -0.3 177,777 + SM_b20159 0.19 +0.4 177,777 + SM_b20159 0.19 +0.5 177,778 - SM_b20159 0.20 -0.1 177,820 + SM_b20159 0.24 -0.8 177,821 - SM_b20159 0.24 -0.4 178,002 - SM_b20159 0.45 -0.3 178,338 - SM_b20159 0.83 +0.2 178,397 + SM_b20159 0.89 -2.0
Or see this region's nucleotide sequence