Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20057 and SM_b20058 overlap by 4 nucleotides SM_b20058 and SM_b20059 are separated by 3 nucleotides SM_b20059 and SM_b20060 are separated by 91 nucleotides
SM_b20057: SM_b20057 - ABC transporter permease, at 67,708 to 68,751
_b20057
SM_b20058: SM_b20058 - ABC transporter ATP-binding protein, at 68,748 to 69,548
_b20058
SM_b20059: SM_b20059 - SAM-dependent methyltransferase, at 69,552 to 70,331
_b20059
SM_b20060: SM_b20060 - ISRm5 transposase, at 70,423 to 71,619
_b20060
Position (kb) 69
70
71 Strain fitness (log2 ratio) -1
0
1 at 68.723 kb on + strand at 69.594 kb on + strand at 69.595 kb on - strand at 69.857 kb on - strand, within SM_b20059 at 69.897 kb on + strand, within SM_b20059 at 69.897 kb on + strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 70.096 kb on - strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 68,723 + +1.4 69,594 + -0.7 69,595 - +0.0 69,857 - SM_b20059 0.39 -0.6 69,897 + SM_b20059 0.44 +0.4 69,897 + SM_b20059 0.44 +1.1 69,898 - SM_b20059 0.44 -0.0 69,898 - SM_b20059 0.44 -0.5 69,898 - SM_b20059 0.44 -0.9 70,096 - SM_b20059 0.70 -0.2 70,210 + SM_b20059 0.84 -0.2 70,210 + SM_b20059 0.84 +0.4 70,210 + SM_b20059 0.84 -0.1 70,330 - -0.8
Or see this region's nucleotide sequence