Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20035 and SM_b20036 are separated by 60 nucleotides SM_b20036 and SM_b20037 are separated by 79 nucleotides
SM_b20035: SM_b20035 - ABC transporter permease, at 45,308 to 46,588
_b20035
SM_b20036: SM_b20036 - ABC transporter substrate-binding protein, at 46,649 to 47,665
_b20036
SM_b20037: SM_b20037 - shikimate 5-dehydrogenase, at 47,745 to 48,605
_b20037
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1
2 at 45.756 kb on + strand, within SM_b20035 at 45.756 kb on + strand, within SM_b20035 at 45.757 kb on - strand, within SM_b20035 at 45.831 kb on + strand, within SM_b20035 at 45.832 kb on - strand, within SM_b20035 at 45.832 kb on - strand, within SM_b20035 at 45.906 kb on + strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.255 kb on + strand, within SM_b20035 at 46.373 kb on + strand at 46.608 kb on - strand at 47.151 kb on + strand, within SM_b20036 at 47.152 kb on - strand, within SM_b20036 at 47.238 kb on - strand, within SM_b20036 at 47.239 kb on + strand, within SM_b20036 at 47.249 kb on + strand, within SM_b20036 at 47.250 kb on - strand, within SM_b20036 at 47.250 kb on - strand, within SM_b20036 at 47.250 kb on - strand, within SM_b20036 at 47.251 kb on + strand, within SM_b20036 at 47.251 kb on + strand, within SM_b20036 at 47.252 kb on - strand, within SM_b20036 at 47.336 kb on + strand, within SM_b20036 at 47.337 kb on - strand, within SM_b20036 at 47.337 kb on - strand, within SM_b20036 at 47.360 kb on + strand, within SM_b20036 at 47.361 kb on - strand, within SM_b20036 at 47.825 kb on + strand at 47.825 kb on + strand at 47.825 kb on + strand at 47.826 kb on - strand at 47.826 kb on - strand at 47.957 kb on + strand, within SM_b20037 at 47.958 kb on - strand, within SM_b20037 at 47.992 kb on - strand, within SM_b20037 at 47.992 kb on - strand, within SM_b20037 at 48.077 kb on + strand, within SM_b20037 at 48.077 kb on + strand, within SM_b20037 at 48.184 kb on - strand, within SM_b20037 at 48.184 kb on - strand, within SM_b20037 at 48.373 kb on - strand, within SM_b20037 at 48.436 kb on - strand, within SM_b20037 at 48.646 kb on + strand at 48.646 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 45,756 + SM_b20035 0.35 +0.2 45,756 + SM_b20035 0.35 +0.7 45,757 - SM_b20035 0.35 +0.2 45,831 + SM_b20035 0.41 -0.5 45,832 - SM_b20035 0.41 +0.2 45,832 - SM_b20035 0.41 -0.2 45,906 + SM_b20035 0.47 +0.3 46,047 - SM_b20035 0.58 -0.0 46,047 - SM_b20035 0.58 -1.2 46,047 - SM_b20035 0.58 -0.4 46,255 + SM_b20035 0.74 -1.2 46,373 + +0.4 46,608 - -0.3 47,151 + SM_b20036 0.49 +0.4 47,152 - SM_b20036 0.49 +0.1 47,238 - SM_b20036 0.58 -0.8 47,239 + SM_b20036 0.58 -0.1 47,249 + SM_b20036 0.59 -0.0 47,250 - SM_b20036 0.59 -0.5 47,250 - SM_b20036 0.59 +0.4 47,250 - SM_b20036 0.59 +0.2 47,251 + SM_b20036 0.59 +0.5 47,251 + SM_b20036 0.59 -0.3 47,252 - SM_b20036 0.59 -0.0 47,336 + SM_b20036 0.68 -0.5 47,337 - SM_b20036 0.68 -0.1 47,337 - SM_b20036 0.68 -0.7 47,360 + SM_b20036 0.70 +0.4 47,361 - SM_b20036 0.70 +0.1 47,825 + -1.5 47,825 + +0.1 47,825 + -0.1 47,826 - -1.0 47,826 - +2.1 47,957 + SM_b20037 0.25 -0.3 47,958 - SM_b20037 0.25 -0.8 47,992 - SM_b20037 0.29 -0.3 47,992 - SM_b20037 0.29 +0.1 48,077 + SM_b20037 0.39 -0.2 48,077 + SM_b20037 0.39 +0.4 48,184 - SM_b20037 0.51 +0.0 48,184 - SM_b20037 0.51 -0.2 48,373 - SM_b20037 0.73 -0.1 48,436 - SM_b20037 0.80 +0.2 48,646 + +0.1 48,646 + +0.9
Or see this region's nucleotide sequence