Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4862

Experiment: KB with Chaulmoogric 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4861 and Psyr_4862 overlap by 4 nucleotidesPsyr_4862 and Psyr_4863 overlap by 4 nucleotides Psyr_4861: Psyr_4861 - Binding-protein-dependent transport systems inner membrane component, at 5,769,461 to 5,770,342 _4861 Psyr_4862: Psyr_4862 - Binding-protein-dependent transport systems inner membrane component, at 5,770,339 to 5,771,259 _4862 Psyr_4863: Psyr_4863 - Spermidine/putrescine ABC transporter ATP-binding subunit, at 5,771,256 to 5,772,398 _4863 Position (kb) 5770 5771 5772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5769.791 kb on - strand, within Psyr_4861at 5769.870 kb on - strand, within Psyr_4861at 5769.870 kb on - strand, within Psyr_4861at 5769.870 kb on - strand, within Psyr_4861at 5769.897 kb on + strand, within Psyr_4861at 5769.897 kb on + strand, within Psyr_4861at 5769.897 kb on + strand, within Psyr_4861at 5769.897 kb on + strand, within Psyr_4861at 5769.897 kb on + strand, within Psyr_4861at 5769.898 kb on - strand, within Psyr_4861at 5769.898 kb on - strand, within Psyr_4861at 5770.026 kb on - strand, within Psyr_4861at 5770.137 kb on + strand, within Psyr_4861at 5770.138 kb on - strand, within Psyr_4861at 5770.203 kb on + strand, within Psyr_4861at 5770.203 kb on + strand, within Psyr_4861at 5770.203 kb on + strand, within Psyr_4861at 5770.204 kb on - strand, within Psyr_4861at 5770.204 kb on - strand, within Psyr_4861at 5770.260 kb on + strandat 5770.260 kb on + strandat 5770.260 kb on + strandat 5770.260 kb on + strandat 5770.261 kb on - strandat 5770.261 kb on - strandat 5770.261 kb on - strandat 5770.261 kb on - strandat 5770.287 kb on + strandat 5770.287 kb on + strandat 5770.287 kb on + strandat 5770.287 kb on + strandat 5770.287 kb on + strandat 5770.287 kb on + strandat 5770.287 kb on + strandat 5770.287 kb on + strandat 5770.288 kb on - strandat 5770.288 kb on - strandat 5770.288 kb on - strandat 5770.288 kb on - strandat 5770.341 kb on + strandat 5770.549 kb on + strand, within Psyr_4862at 5770.683 kb on - strand, within Psyr_4862at 5770.710 kb on - strand, within Psyr_4862at 5770.710 kb on - strand, within Psyr_4862at 5770.715 kb on + strand, within Psyr_4862at 5770.715 kb on + strand, within Psyr_4862at 5770.715 kb on + strand, within Psyr_4862at 5770.716 kb on - strand, within Psyr_4862at 5770.716 kb on - strand, within Psyr_4862at 5770.730 kb on + strand, within Psyr_4862at 5770.731 kb on - strand, within Psyr_4862at 5770.731 kb on - strand, within Psyr_4862at 5770.731 kb on - strand, within Psyr_4862at 5770.731 kb on - strand, within Psyr_4862at 5770.839 kb on - strand, within Psyr_4862at 5771.009 kb on + strand, within Psyr_4862at 5771.009 kb on + strand, within Psyr_4862at 5771.010 kb on - strand, within Psyr_4862at 5771.036 kb on + strand, within Psyr_4862at 5771.036 kb on + strand, within Psyr_4862at 5771.036 kb on + strand, within Psyr_4862at 5771.036 kb on + strand, within Psyr_4862at 5771.036 kb on + strand, within Psyr_4862at 5771.036 kb on + strand, within Psyr_4862at 5771.036 kb on + strand, within Psyr_4862at 5771.037 kb on - strand, within Psyr_4862at 5771.037 kb on - strand, within Psyr_4862at 5771.037 kb on - strand, within Psyr_4862at 5771.037 kb on - strand, within Psyr_4862at 5771.037 kb on - strand, within Psyr_4862at 5771.037 kb on - strand, within Psyr_4862at 5771.037 kb on - strand, within Psyr_4862at 5771.079 kb on - strand, within Psyr_4862at 5771.079 kb on - strand, within Psyr_4862at 5771.096 kb on + strand, within Psyr_4862at 5771.096 kb on + strand, within Psyr_4862at 5771.268 kb on + strandat 5771.299 kb on + strandat 5771.299 kb on + strandat 5771.299 kb on + strandat 5771.299 kb on + strandat 5771.299 kb on + strandat 5771.300 kb on - strandat 5771.300 kb on - strandat 5771.389 kb on + strand, within Psyr_4863at 5771.390 kb on - strand, within Psyr_4863at 5771.390 kb on - strand, within Psyr_4863at 5771.414 kb on - strand, within Psyr_4863at 5771.449 kb on + strand, within Psyr_4863at 5771.449 kb on + strand, within Psyr_4863at 5771.449 kb on + strand, within Psyr_4863at 5771.450 kb on - strand, within Psyr_4863at 5771.504 kb on - strand, within Psyr_4863at 5771.504 kb on - strand, within Psyr_4863at 5771.507 kb on + strand, within Psyr_4863at 5771.507 kb on + strand, within Psyr_4863at 5771.507 kb on + strand, within Psyr_4863at 5771.507 kb on + strand, within Psyr_4863at 5771.507 kb on + strand, within Psyr_4863at 5771.508 kb on - strand, within Psyr_4863at 5771.508 kb on - strand, within Psyr_4863at 5771.508 kb on - strand, within Psyr_4863at 5771.508 kb on - strand, within Psyr_4863at 5771.508 kb on - strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.551 kb on + strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.552 kb on - strand, within Psyr_4863at 5771.555 kb on + strand, within Psyr_4863at 5771.555 kb on + strand, within Psyr_4863at 5771.555 kb on + strand, within Psyr_4863at 5771.555 kb on + strand, within Psyr_4863at 5771.556 kb on - strand, within Psyr_4863at 5771.556 kb on - strand, within Psyr_4863at 5771.556 kb on - strand, within Psyr_4863at 5771.556 kb on - strand, within Psyr_4863at 5771.677 kb on + strand, within Psyr_4863at 5771.677 kb on + strand, within Psyr_4863at 5771.677 kb on + strand, within Psyr_4863at 5771.677 kb on + strand, within Psyr_4863at 5771.677 kb on + strand, within Psyr_4863at 5771.678 kb on - strand, within Psyr_4863at 5771.678 kb on - strand, within Psyr_4863at 5771.678 kb on - strand, within Psyr_4863at 5771.678 kb on - strand, within Psyr_4863at 5771.678 kb on - strand, within Psyr_4863at 5771.678 kb on - strand, within Psyr_4863at 5771.965 kb on + strand, within Psyr_4863at 5772.160 kb on + strand, within Psyr_4863at 5772.160 kb on + strand, within Psyr_4863at 5772.161 kb on - strand, within Psyr_4863at 5772.161 kb on - strand, within Psyr_4863at 5772.161 kb on - strand, within Psyr_4863at 5772.161 kb on - strand, within Psyr_4863

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM
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5,769,791 - Psyr_4861 0.37 +0.4
5,769,870 - Psyr_4861 0.46 +0.3
5,769,870 - Psyr_4861 0.46 +0.6
5,769,870 - Psyr_4861 0.46 +0.1
5,769,897 + Psyr_4861 0.49 -0.4
5,769,897 + Psyr_4861 0.49 -1.6
5,769,897 + Psyr_4861 0.49 +0.5
5,769,897 + Psyr_4861 0.49 -0.2
5,769,897 + Psyr_4861 0.49 -1.3
5,769,898 - Psyr_4861 0.50 +0.8
5,769,898 - Psyr_4861 0.50 +0.2
5,770,026 - Psyr_4861 0.64 -1.0
5,770,137 + Psyr_4861 0.77 -0.2
5,770,138 - Psyr_4861 0.77 -1.2
5,770,203 + Psyr_4861 0.84 -0.2
5,770,203 + Psyr_4861 0.84 +0.3
5,770,203 + Psyr_4861 0.84 -1.0
5,770,204 - Psyr_4861 0.84 +1.0
5,770,204 - Psyr_4861 0.84 -0.2
5,770,260 + -0.1
5,770,260 + +0.4
5,770,260 + -1.1
5,770,260 + +0.3
5,770,261 - -1.0
5,770,261 - +0.1
5,770,261 - -0.0
5,770,261 - -0.4
5,770,287 + -0.9
5,770,287 + -0.3
5,770,287 + +1.2
5,770,287 + +0.3
5,770,287 + +0.9
5,770,287 + -1.6
5,770,287 + +0.8
5,770,287 + -0.4
5,770,288 - -1.5
5,770,288 - +0.5
5,770,288 - +0.0
5,770,288 - -1.1
5,770,341 + +0.2
5,770,549 + Psyr_4862 0.23 +0.5
5,770,683 - Psyr_4862 0.37 +2.0
5,770,710 - Psyr_4862 0.40 -0.1
5,770,710 - Psyr_4862 0.40 -1.0
5,770,715 + Psyr_4862 0.41 +0.5
5,770,715 + Psyr_4862 0.41 +0.7
5,770,715 + Psyr_4862 0.41 -0.7
5,770,716 - Psyr_4862 0.41 -0.4
5,770,716 - Psyr_4862 0.41 -0.9
5,770,730 + Psyr_4862 0.42 -0.4
5,770,731 - Psyr_4862 0.43 -0.0
5,770,731 - Psyr_4862 0.43 +0.9
5,770,731 - Psyr_4862 0.43 -1.4
5,770,731 - Psyr_4862 0.43 -0.5
5,770,839 - Psyr_4862 0.54 +0.0
5,771,009 + Psyr_4862 0.73 +0.2
5,771,009 + Psyr_4862 0.73 +0.1
5,771,010 - Psyr_4862 0.73 -0.3
5,771,036 + Psyr_4862 0.76 +1.3
5,771,036 + Psyr_4862 0.76 -0.4
5,771,036 + Psyr_4862 0.76 -1.1
5,771,036 + Psyr_4862 0.76 -0.5
5,771,036 + Psyr_4862 0.76 +0.1
5,771,036 + Psyr_4862 0.76 -1.0
5,771,036 + Psyr_4862 0.76 -1.0
5,771,037 - Psyr_4862 0.76 -3.4
5,771,037 - Psyr_4862 0.76 -1.4
5,771,037 - Psyr_4862 0.76 +0.4
5,771,037 - Psyr_4862 0.76 -0.2
5,771,037 - Psyr_4862 0.76 -0.5
5,771,037 - Psyr_4862 0.76 -0.1
5,771,037 - Psyr_4862 0.76 -1.1
5,771,079 - Psyr_4862 0.80 +0.3
5,771,079 - Psyr_4862 0.80 +0.0
5,771,096 + Psyr_4862 0.82 -0.8
5,771,096 + Psyr_4862 0.82 -0.5
5,771,268 + +0.5
5,771,299 + +0.2
5,771,299 + -0.7
5,771,299 + -0.7
5,771,299 + +1.2
5,771,299 + +1.2
5,771,300 - -0.2
5,771,300 - +1.8
5,771,389 + Psyr_4863 0.12 -0.5
5,771,390 - Psyr_4863 0.12 -0.5
5,771,390 - Psyr_4863 0.12 -0.8
5,771,414 - Psyr_4863 0.14 -0.1
5,771,449 + Psyr_4863 0.17 +1.4
5,771,449 + Psyr_4863 0.17 +0.0
5,771,449 + Psyr_4863 0.17 +0.1
5,771,450 - Psyr_4863 0.17 -1.1
5,771,504 - Psyr_4863 0.22 -0.2
5,771,504 - Psyr_4863 0.22 -0.0
5,771,507 + Psyr_4863 0.22 -0.7
5,771,507 + Psyr_4863 0.22 +0.8
5,771,507 + Psyr_4863 0.22 -1.4
5,771,507 + Psyr_4863 0.22 -0.7
5,771,507 + Psyr_4863 0.22 +0.2
5,771,508 - Psyr_4863 0.22 +0.4
5,771,508 - Psyr_4863 0.22 -0.0
5,771,508 - Psyr_4863 0.22 -1.1
5,771,508 - Psyr_4863 0.22 -1.1
5,771,508 - Psyr_4863 0.22 -0.1
5,771,551 + Psyr_4863 0.26 +0.5
5,771,551 + Psyr_4863 0.26 -1.4
5,771,551 + Psyr_4863 0.26 +2.2
5,771,551 + Psyr_4863 0.26 +0.8
5,771,551 + Psyr_4863 0.26 -0.7
5,771,551 + Psyr_4863 0.26 -1.6
5,771,551 + Psyr_4863 0.26 -1.3
5,771,551 + Psyr_4863 0.26 -0.5
5,771,551 + Psyr_4863 0.26 -0.0
5,771,551 + Psyr_4863 0.26 +0.6
5,771,551 + Psyr_4863 0.26 +0.1
5,771,551 + Psyr_4863 0.26 -0.2
5,771,551 + Psyr_4863 0.26 +0.0
5,771,552 - Psyr_4863 0.26 -1.4
5,771,552 - Psyr_4863 0.26 -0.8
5,771,552 - Psyr_4863 0.26 +0.8
5,771,552 - Psyr_4863 0.26 +0.3
5,771,552 - Psyr_4863 0.26 -0.1
5,771,552 - Psyr_4863 0.26 +0.0
5,771,552 - Psyr_4863 0.26 +1.4
5,771,552 - Psyr_4863 0.26 +1.4
5,771,552 - Psyr_4863 0.26 -0.4
5,771,552 - Psyr_4863 0.26 -0.5
5,771,552 - Psyr_4863 0.26 +0.5
5,771,552 - Psyr_4863 0.26 -1.1
5,771,552 - Psyr_4863 0.26 -0.7
5,771,552 - Psyr_4863 0.26 -0.6
5,771,552 - Psyr_4863 0.26 -0.1
5,771,552 - Psyr_4863 0.26 -0.2
5,771,552 - Psyr_4863 0.26 +0.1
5,771,552 - Psyr_4863 0.26 +0.3
5,771,552 - Psyr_4863 0.26 +0.0
5,771,552 - Psyr_4863 0.26 +0.8
5,771,552 - Psyr_4863 0.26 -1.4
5,771,552 - Psyr_4863 0.26 +0.6
5,771,555 + Psyr_4863 0.26 -1.0
5,771,555 + Psyr_4863 0.26 +0.7
5,771,555 + Psyr_4863 0.26 +0.1
5,771,555 + Psyr_4863 0.26 -1.8
5,771,556 - Psyr_4863 0.26 -2.0
5,771,556 - Psyr_4863 0.26 -2.7
5,771,556 - Psyr_4863 0.26 -0.4
5,771,556 - Psyr_4863 0.26 +0.9
5,771,677 + Psyr_4863 0.37 -0.0
5,771,677 + Psyr_4863 0.37 -0.8
5,771,677 + Psyr_4863 0.37 +0.1
5,771,677 + Psyr_4863 0.37 +0.0
5,771,677 + Psyr_4863 0.37 -0.8
5,771,678 - Psyr_4863 0.37 -0.2
5,771,678 - Psyr_4863 0.37 +2.6
5,771,678 - Psyr_4863 0.37 -0.0
5,771,678 - Psyr_4863 0.37 +0.2
5,771,678 - Psyr_4863 0.37 -0.0
5,771,678 - Psyr_4863 0.37 -0.5
5,771,965 + Psyr_4863 0.62 -1.0
5,772,160 + Psyr_4863 0.79 -0.7
5,772,160 + Psyr_4863 0.79 -1.1
5,772,161 - Psyr_4863 0.79 -0.6
5,772,161 - Psyr_4863 0.79 -0.7
5,772,161 - Psyr_4863 0.79 -0.9
5,772,161 - Psyr_4863 0.79 -1.3

Or see this region's nucleotide sequence