Experiment: KB with Chaulmoogric 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4494 and Psyr_4495 are separated by 282 nucleotides Psyr_4495 and Psyr_4496 are separated by 230 nucleotides
Psyr_4494: Psyr_4494 - ABC-type phosphate/phosphonate transport system periplasmic component-like protein, at 5,357,037 to 5,357,888
_4494
Psyr_4495: Psyr_4495 - Beta-lactamase, at 5,358,171 to 5,359,076
_4495
Psyr_4496: Psyr_4496 - outer membrane transport energization protein TonB, at 5,359,307 to 5,360,020
_4496
Position (kb) 5358
5359
5360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5357.225 kb on + strand, within Psyr_4494 at 5357.254 kb on - strand, within Psyr_4494 at 5357.322 kb on + strand, within Psyr_4494 at 5357.322 kb on + strand, within Psyr_4494 at 5357.358 kb on - strand, within Psyr_4494 at 5357.408 kb on + strand, within Psyr_4494 at 5357.408 kb on + strand, within Psyr_4494 at 5357.408 kb on + strand, within Psyr_4494 at 5357.409 kb on - strand, within Psyr_4494 at 5357.409 kb on - strand, within Psyr_4494 at 5357.409 kb on - strand, within Psyr_4494 at 5357.409 kb on - strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.453 kb on + strand, within Psyr_4494 at 5357.453 kb on + strand, within Psyr_4494 at 5357.453 kb on + strand, within Psyr_4494 at 5357.453 kb on + strand, within Psyr_4494 at 5357.454 kb on - strand, within Psyr_4494 at 5357.502 kb on + strand, within Psyr_4494 at 5357.662 kb on + strand, within Psyr_4494 at 5357.662 kb on + strand, within Psyr_4494 at 5357.663 kb on - strand, within Psyr_4494 at 5357.663 kb on - strand, within Psyr_4494 at 5357.663 kb on - strand, within Psyr_4494 at 5357.663 kb on - strand, within Psyr_4494 at 5357.731 kb on + strand, within Psyr_4494 at 5357.731 kb on + strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.736 kb on + strand, within Psyr_4494 at 5357.736 kb on + strand, within Psyr_4494 at 5357.737 kb on - strand, within Psyr_4494 at 5357.808 kb on - strand at 5357.862 kb on - strand at 5357.862 kb on - strand at 5357.881 kb on - strand at 5357.907 kb on + strand at 5357.908 kb on - strand at 5357.908 kb on - strand at 5357.908 kb on - strand at 5357.908 kb on - strand at 5357.916 kb on - strand at 5357.943 kb on + strand at 5357.943 kb on + strand at 5357.962 kb on + strand at 5357.986 kb on + strand at 5357.990 kb on + strand at 5358.005 kb on + strand at 5358.006 kb on - strand at 5358.076 kb on + strand at 5358.076 kb on + strand at 5358.076 kb on + strand at 5358.077 kb on - strand at 5358.077 kb on - strand at 5358.080 kb on - strand at 5358.080 kb on - strand at 5358.080 kb on - strand at 5358.080 kb on - strand at 5358.118 kb on + strand at 5358.119 kb on - strand at 5358.248 kb on + strand at 5358.248 kb on + strand at 5358.277 kb on + strand, within Psyr_4495 at 5358.350 kb on - strand, within Psyr_4495 at 5358.350 kb on - strand, within Psyr_4495 at 5358.350 kb on - strand, within Psyr_4495 at 5358.396 kb on + strand, within Psyr_4495 at 5358.397 kb on - strand, within Psyr_4495 at 5358.397 kb on - strand, within Psyr_4495 at 5358.535 kb on + strand, within Psyr_4495 at 5358.535 kb on + strand, within Psyr_4495 at 5358.623 kb on + strand, within Psyr_4495 at 5358.640 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.690 kb on + strand, within Psyr_4495 at 5358.886 kb on - strand, within Psyr_4495 at 5358.936 kb on + strand, within Psyr_4495 at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.087 kb on + strand at 5359.087 kb on + strand at 5359.087 kb on + strand at 5359.110 kb on - strand at 5359.156 kb on - strand at 5359.156 kb on - strand at 5359.162 kb on + strand at 5359.163 kb on - strand at 5359.180 kb on + strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.202 kb on + strand at 5359.202 kb on + strand at 5359.202 kb on + strand at 5359.203 kb on - strand at 5359.415 kb on - strand, within Psyr_4496 at 5359.415 kb on - strand, within Psyr_4496 at 5359.415 kb on - strand, within Psyr_4496 at 5359.415 kb on - strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.481 kb on - strand, within Psyr_4496 at 5359.481 kb on - strand, within Psyr_4496 at 5359.481 kb on - strand, within Psyr_4496 at 5359.484 kb on + strand, within Psyr_4496 at 5359.484 kb on + strand, within Psyr_4496 at 5359.484 kb on + strand, within Psyr_4496 at 5359.484 kb on + strand, within Psyr_4496 at 5359.485 kb on - strand, within Psyr_4496 at 5359.485 kb on - strand, within Psyr_4496 at 5359.705 kb on - strand, within Psyr_4496 at 5359.763 kb on + strand, within Psyr_4496 at 5359.764 kb on - strand, within Psyr_4496 at 5359.881 kb on + strand, within Psyr_4496 at 5359.881 kb on + strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.982 kb on + strand at 5359.982 kb on + strand at 5359.982 kb on + strand at 5359.983 kb on - strand at 5360.018 kb on + strand at 5360.018 kb on + strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM remove 5,357,225 + Psyr_4494 0.22 -0.6 5,357,254 - Psyr_4494 0.25 +0.4 5,357,322 + Psyr_4494 0.33 -1.0 5,357,322 + Psyr_4494 0.33 +1.2 5,357,358 - Psyr_4494 0.38 +0.2 5,357,408 + Psyr_4494 0.44 -0.4 5,357,408 + Psyr_4494 0.44 +1.1 5,357,408 + Psyr_4494 0.44 -0.8 5,357,409 - Psyr_4494 0.44 +0.4 5,357,409 - Psyr_4494 0.44 -0.8 5,357,409 - Psyr_4494 0.44 +1.3 5,357,409 - Psyr_4494 0.44 +1.3 5,357,414 + Psyr_4494 0.44 +0.4 5,357,414 + Psyr_4494 0.44 -1.0 5,357,414 + Psyr_4494 0.44 +1.5 5,357,414 + Psyr_4494 0.44 +1.3 5,357,414 + Psyr_4494 0.44 -1.1 5,357,414 + Psyr_4494 0.44 -2.5 5,357,414 + Psyr_4494 0.44 -0.0 5,357,414 + Psyr_4494 0.44 +0.6 5,357,414 + Psyr_4494 0.44 +0.8 5,357,415 - Psyr_4494 0.44 -1.3 5,357,415 - Psyr_4494 0.44 +0.3 5,357,415 - Psyr_4494 0.44 -0.3 5,357,415 - Psyr_4494 0.44 -0.8 5,357,415 - Psyr_4494 0.44 +1.1 5,357,415 - Psyr_4494 0.44 -0.1 5,357,415 - Psyr_4494 0.44 +0.9 5,357,415 - Psyr_4494 0.44 +1.6 5,357,415 - Psyr_4494 0.44 +1.7 5,357,415 - Psyr_4494 0.44 -0.4 5,357,415 - Psyr_4494 0.44 +1.1 5,357,415 - Psyr_4494 0.44 +0.5 5,357,415 - Psyr_4494 0.44 +0.2 5,357,453 + Psyr_4494 0.49 -0.4 5,357,453 + Psyr_4494 0.49 +1.8 5,357,453 + Psyr_4494 0.49 +0.3 5,357,453 + Psyr_4494 0.49 +0.9 5,357,454 - Psyr_4494 0.49 +3.4 5,357,502 + Psyr_4494 0.55 -0.3 5,357,662 + Psyr_4494 0.73 +2.4 5,357,662 + Psyr_4494 0.73 -0.5 5,357,663 - Psyr_4494 0.73 +0.6 5,357,663 - Psyr_4494 0.73 +0.8 5,357,663 - Psyr_4494 0.73 +0.5 5,357,663 - Psyr_4494 0.73 +3.2 5,357,731 + Psyr_4494 0.81 +0.9 5,357,731 + Psyr_4494 0.81 -0.9 5,357,732 - Psyr_4494 0.82 +1.1 5,357,732 - Psyr_4494 0.82 -0.3 5,357,732 - Psyr_4494 0.82 -0.5 5,357,732 - Psyr_4494 0.82 -0.5 5,357,732 - Psyr_4494 0.82 +0.3 5,357,736 + Psyr_4494 0.82 +0.3 5,357,736 + Psyr_4494 0.82 -0.9 5,357,737 - Psyr_4494 0.82 +0.2 5,357,808 - -0.2 5,357,862 - +1.3 5,357,862 - -0.2 5,357,881 - -0.0 5,357,907 + -1.9 5,357,908 - -0.1 5,357,908 - -2.2 5,357,908 - -0.0 5,357,908 - +0.1 5,357,916 - -1.7 5,357,943 + -0.9 5,357,943 + +0.0 5,357,962 + +3.1 5,357,986 + -1.9 5,357,990 + +0.3 5,358,005 + +3.4 5,358,006 - +0.4 5,358,076 + -0.4 5,358,076 + -0.6 5,358,076 + +0.7 5,358,077 - +0.4 5,358,077 - +0.8 5,358,080 - -0.9 5,358,080 - +0.1 5,358,080 - +2.4 5,358,080 - -1.6 5,358,118 + +0.4 5,358,119 - +0.3 5,358,248 + +1.9 5,358,248 + -0.5 5,358,277 + Psyr_4495 0.12 +1.5 5,358,350 - Psyr_4495 0.20 -0.2 5,358,350 - Psyr_4495 0.20 +0.3 5,358,350 - Psyr_4495 0.20 +0.2 5,358,396 + Psyr_4495 0.25 +1.1 5,358,397 - Psyr_4495 0.25 +1.3 5,358,397 - Psyr_4495 0.25 -0.8 5,358,535 + Psyr_4495 0.40 +0.7 5,358,535 + Psyr_4495 0.40 -0.5 5,358,623 + Psyr_4495 0.50 -0.2 5,358,640 + Psyr_4495 0.52 +2.4 5,358,662 + Psyr_4495 0.54 +0.1 5,358,662 + Psyr_4495 0.54 -1.0 5,358,662 + Psyr_4495 0.54 -0.4 5,358,662 + Psyr_4495 0.54 -1.6 5,358,672 + Psyr_4495 0.55 -0.9 5,358,672 + Psyr_4495 0.55 +0.3 5,358,672 + Psyr_4495 0.55 +0.6 5,358,672 + Psyr_4495 0.55 +0.3 5,358,673 - Psyr_4495 0.55 +0.5 5,358,673 - Psyr_4495 0.55 +0.6 5,358,673 - Psyr_4495 0.55 -1.2 5,358,690 + Psyr_4495 0.57 -1.2 5,358,886 - Psyr_4495 0.79 +0.1 5,358,936 + Psyr_4495 0.84 +1.6 5,359,031 + +0.4 5,359,031 + +1.6 5,359,031 + -0.0 5,359,031 + +0.4 5,359,031 + +1.1 5,359,031 + -0.3 5,359,031 + -1.2 5,359,031 + -0.1 5,359,031 + +0.4 5,359,031 + -0.5 5,359,031 + +0.3 5,359,032 - -1.5 5,359,032 - -0.3 5,359,032 - +0.2 5,359,032 - +4.1 5,359,032 - +0.2 5,359,032 - -0.5 5,359,032 - +1.1 5,359,087 + +0.6 5,359,087 + +1.2 5,359,087 + +0.4 5,359,110 - -0.1 5,359,156 - -1.2 5,359,156 - -1.3 5,359,162 + +1.1 5,359,163 - +0.9 5,359,180 + -0.5 5,359,181 - +1.1 5,359,181 - -0.8 5,359,181 - -0.4 5,359,181 - +0.2 5,359,181 - +0.5 5,359,181 - -0.5 5,359,200 + -0.3 5,359,200 + +0.6 5,359,200 + +0.1 5,359,200 + +0.7 5,359,200 + +1.6 5,359,200 + +0.7 5,359,200 + -1.5 5,359,200 + -0.1 5,359,200 + -0.3 5,359,200 + +0.2 5,359,200 + +0.5 5,359,200 + +0.0 5,359,200 + +0.6 5,359,200 + -1.9 5,359,200 + -0.4 5,359,200 + +0.5 5,359,201 - +0.6 5,359,201 - +0.1 5,359,201 - -0.0 5,359,201 - -0.3 5,359,201 - -0.4 5,359,201 - +0.1 5,359,201 - -1.1 5,359,201 - +0.1 5,359,201 - +1.1 5,359,201 - -0.4 5,359,201 - +1.1 5,359,201 - -1.0 5,359,202 + +0.5 5,359,202 + -0.9 5,359,202 + -0.7 5,359,203 - -1.9 5,359,415 - Psyr_4496 0.15 -0.4 5,359,415 - Psyr_4496 0.15 -0.4 5,359,415 - Psyr_4496 0.15 +0.6 5,359,415 - Psyr_4496 0.15 +0.1 5,359,480 + Psyr_4496 0.24 +0.6 5,359,480 + Psyr_4496 0.24 -2.8 5,359,480 + Psyr_4496 0.24 -0.3 5,359,480 + Psyr_4496 0.24 -1.1 5,359,480 + Psyr_4496 0.24 +2.6 5,359,480 + Psyr_4496 0.24 -0.9 5,359,481 - Psyr_4496 0.24 +0.5 5,359,481 - Psyr_4496 0.24 -1.2 5,359,481 - Psyr_4496 0.24 -1.3 5,359,484 + Psyr_4496 0.25 +1.1 5,359,484 + Psyr_4496 0.25 +2.1 5,359,484 + Psyr_4496 0.25 -0.2 5,359,484 + Psyr_4496 0.25 +1.3 5,359,485 - Psyr_4496 0.25 -2.6 5,359,485 - Psyr_4496 0.25 -0.2 5,359,705 - Psyr_4496 0.56 +0.2 5,359,763 + Psyr_4496 0.64 -0.2 5,359,764 - Psyr_4496 0.64 -0.2 5,359,881 + Psyr_4496 0.80 +2.1 5,359,881 + Psyr_4496 0.80 +0.3 5,359,882 - Psyr_4496 0.81 +0.4 5,359,882 - Psyr_4496 0.81 -1.6 5,359,882 - Psyr_4496 0.81 +0.3 5,359,882 - Psyr_4496 0.81 -0.2 5,359,982 + -0.5 5,359,982 + +0.5 5,359,982 + -0.7 5,359,983 - +0.3 5,360,018 + -1.2 5,360,018 + -0.2 5,360,019 - -0.3 5,360,019 - +1.1 5,360,019 - -1.3 5,360,019 - -0.3 5,360,035 + -1.3
Or see this region's nucleotide sequence