Experiment: KB with Chaulmoogric 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4337 and Psyr_4338 are separated by 52 nucleotides Psyr_4338 and Psyr_4339 are separated by 122 nucleotides
Psyr_4337: Psyr_4337 - AMP nucleosidase, at 5,188,303 to 5,189,766
_4337
Psyr_4338: Psyr_4338 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 5,189,819 to 5,191,468
_4338
Psyr_4339: Psyr_4339 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase, at 5,191,591 to 5,193,624
_4339
Position (kb) 5189
5190
5191
5192 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5188.876 kb on + strand, within Psyr_4337 at 5188.876 kb on + strand, within Psyr_4337 at 5189.051 kb on - strand, within Psyr_4337 at 5189.135 kb on + strand, within Psyr_4337 at 5189.136 kb on - strand, within Psyr_4337 at 5189.136 kb on - strand, within Psyr_4337 at 5189.136 kb on - strand, within Psyr_4337 at 5189.144 kb on + strand, within Psyr_4337 at 5189.144 kb on + strand, within Psyr_4337 at 5189.144 kb on + strand, within Psyr_4337 at 5189.145 kb on - strand, within Psyr_4337 at 5189.145 kb on - strand, within Psyr_4337 at 5189.145 kb on - strand, within Psyr_4337 at 5189.145 kb on - strand, within Psyr_4337 at 5189.145 kb on - strand, within Psyr_4337 at 5189.170 kb on + strand, within Psyr_4337 at 5189.170 kb on + strand, within Psyr_4337 at 5189.170 kb on + strand, within Psyr_4337 at 5189.171 kb on - strand, within Psyr_4337 at 5189.171 kb on - strand, within Psyr_4337 at 5189.171 kb on - strand, within Psyr_4337 at 5189.171 kb on - strand, within Psyr_4337 at 5189.171 kb on - strand, within Psyr_4337 at 5189.171 kb on - strand, within Psyr_4337 at 5189.195 kb on + strand, within Psyr_4337 at 5189.195 kb on + strand, within Psyr_4337 at 5189.195 kb on + strand, within Psyr_4337 at 5189.195 kb on + strand, within Psyr_4337 at 5189.195 kb on + strand, within Psyr_4337 at 5189.196 kb on - strand, within Psyr_4337 at 5189.196 kb on - strand, within Psyr_4337 at 5189.196 kb on - strand, within Psyr_4337 at 5189.196 kb on - strand, within Psyr_4337 at 5189.196 kb on - strand, within Psyr_4337 at 5189.279 kb on + strand, within Psyr_4337 at 5189.279 kb on + strand, within Psyr_4337 at 5189.279 kb on + strand, within Psyr_4337 at 5189.279 kb on + strand, within Psyr_4337 at 5189.279 kb on + strand, within Psyr_4337 at 5189.280 kb on - strand, within Psyr_4337 at 5189.396 kb on + strand, within Psyr_4337 at 5189.396 kb on + strand, within Psyr_4337 at 5189.396 kb on + strand, within Psyr_4337 at 5189.397 kb on - strand, within Psyr_4337 at 5189.397 kb on - strand, within Psyr_4337 at 5189.397 kb on - strand, within Psyr_4337 at 5189.484 kb on - strand, within Psyr_4337 at 5189.484 kb on - strand, within Psyr_4337 at 5189.522 kb on + strand, within Psyr_4337 at 5189.523 kb on - strand, within Psyr_4337 at 5189.523 kb on - strand, within Psyr_4337 at 5189.523 kb on - strand, within Psyr_4337 at 5189.523 kb on - strand, within Psyr_4337 at 5189.523 kb on - strand, within Psyr_4337 at 5189.588 kb on + strand, within Psyr_4337 at 5189.588 kb on + strand, within Psyr_4337 at 5189.588 kb on + strand, within Psyr_4337 at 5189.589 kb on - strand, within Psyr_4337 at 5189.589 kb on - strand, within Psyr_4337 at 5189.589 kb on - strand, within Psyr_4337 at 5189.589 kb on - strand, within Psyr_4337 at 5189.660 kb on + strand at 5189.661 kb on - strand at 5189.722 kb on + strand at 5189.722 kb on + strand at 5189.859 kb on - strand at 5190.241 kb on - strand, within Psyr_4338 at 5190.241 kb on - strand, within Psyr_4338 at 5190.306 kb on + strand, within Psyr_4338 at 5190.306 kb on + strand, within Psyr_4338 at 5190.307 kb on - strand, within Psyr_4338 at 5190.307 kb on - strand, within Psyr_4338 at 5190.307 kb on - strand, within Psyr_4338 at 5190.307 kb on - strand, within Psyr_4338 at 5190.696 kb on + strand, within Psyr_4338 at 5190.696 kb on + strand, within Psyr_4338 at 5190.696 kb on + strand, within Psyr_4338 at 5190.697 kb on - strand, within Psyr_4338 at 5190.814 kb on + strand, within Psyr_4338 at 5190.814 kb on + strand, within Psyr_4338 at 5190.814 kb on + strand, within Psyr_4338 at 5190.814 kb on + strand, within Psyr_4338 at 5190.814 kb on + strand, within Psyr_4338 at 5190.815 kb on - strand, within Psyr_4338 at 5190.831 kb on + strand, within Psyr_4338 at 5190.832 kb on - strand, within Psyr_4338 at 5190.972 kb on + strand, within Psyr_4338 at 5190.973 kb on - strand, within Psyr_4338 at 5191.098 kb on + strand, within Psyr_4338 at 5191.098 kb on + strand, within Psyr_4338 at 5191.098 kb on + strand, within Psyr_4338 at 5191.098 kb on + strand, within Psyr_4338 at 5191.098 kb on + strand, within Psyr_4338 at 5191.098 kb on + strand, within Psyr_4338 at 5191.098 kb on + strand, within Psyr_4338 at 5191.098 kb on + strand, within Psyr_4338 at 5191.099 kb on - strand, within Psyr_4338 at 5191.099 kb on - strand, within Psyr_4338 at 5191.099 kb on - strand, within Psyr_4338 at 5191.197 kb on + strand, within Psyr_4338 at 5191.198 kb on - strand, within Psyr_4338 at 5191.321 kb on - strand at 5191.488 kb on + strand at 5191.488 kb on + strand at 5191.488 kb on + strand at 5191.488 kb on + strand at 5191.489 kb on - strand at 5191.489 kb on - strand at 5191.489 kb on - strand at 5191.489 kb on - strand at 5191.489 kb on - strand at 5191.489 kb on - strand at 5191.489 kb on - strand at 5191.499 kb on + strand at 5191.499 kb on + strand at 5191.500 kb on - strand at 5191.566 kb on + strand at 5191.567 kb on - strand at 5191.580 kb on + strand at 5191.581 kb on - strand at 5191.581 kb on - strand at 5191.592 kb on + strand at 5191.592 kb on + strand at 5191.593 kb on - strand at 5191.593 kb on - strand at 5191.593 kb on - strand at 5191.594 kb on + strand at 5191.594 kb on + strand at 5191.594 kb on + strand at 5191.595 kb on - strand at 5191.595 kb on - strand at 5191.595 kb on - strand at 5191.595 kb on - strand at 5191.671 kb on + strand at 5191.815 kb on - strand, within Psyr_4339 at 5191.877 kb on + strand, within Psyr_4339 at 5191.877 kb on + strand, within Psyr_4339 at 5191.878 kb on - strand, within Psyr_4339 at 5191.878 kb on - strand, within Psyr_4339 at 5192.020 kb on - strand, within Psyr_4339 at 5192.129 kb on + strand, within Psyr_4339 at 5192.129 kb on + strand, within Psyr_4339 at 5192.130 kb on - strand, within Psyr_4339 at 5192.130 kb on - strand, within Psyr_4339 at 5192.130 kb on - strand, within Psyr_4339 at 5192.130 kb on - strand, within Psyr_4339 at 5192.130 kb on - strand, within Psyr_4339 at 5192.130 kb on - strand, within Psyr_4339 at 5192.219 kb on + strand, within Psyr_4339 at 5192.219 kb on + strand, within Psyr_4339 at 5192.219 kb on + strand, within Psyr_4339 at 5192.219 kb on + strand, within Psyr_4339 at 5192.219 kb on + strand, within Psyr_4339 at 5192.219 kb on + strand, within Psyr_4339 at 5192.219 kb on + strand, within Psyr_4339 at 5192.219 kb on + strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.220 kb on - strand, within Psyr_4339 at 5192.331 kb on + strand, within Psyr_4339 at 5192.331 kb on + strand, within Psyr_4339 at 5192.331 kb on + strand, within Psyr_4339 at 5192.332 kb on - strand, within Psyr_4339 at 5192.332 kb on - strand, within Psyr_4339 at 5192.332 kb on - strand, within Psyr_4339 at 5192.332 kb on - strand, within Psyr_4339 at 5192.332 kb on - strand, within Psyr_4339
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM remove 5,188,876 + Psyr_4337 0.39 -0.5 5,188,876 + Psyr_4337 0.39 -0.6 5,189,051 - Psyr_4337 0.51 +1.3 5,189,135 + Psyr_4337 0.57 +0.2 5,189,136 - Psyr_4337 0.57 +0.0 5,189,136 - Psyr_4337 0.57 -0.3 5,189,136 - Psyr_4337 0.57 +0.1 5,189,144 + Psyr_4337 0.57 +0.4 5,189,144 + Psyr_4337 0.57 -0.4 5,189,144 + Psyr_4337 0.57 +0.5 5,189,145 - Psyr_4337 0.58 +0.2 5,189,145 - Psyr_4337 0.58 +0.2 5,189,145 - Psyr_4337 0.58 -0.8 5,189,145 - Psyr_4337 0.58 +0.4 5,189,145 - Psyr_4337 0.58 +0.1 5,189,170 + Psyr_4337 0.59 -1.7 5,189,170 + Psyr_4337 0.59 -0.1 5,189,170 + Psyr_4337 0.59 +1.1 5,189,171 - Psyr_4337 0.59 +0.4 5,189,171 - Psyr_4337 0.59 +2.0 5,189,171 - Psyr_4337 0.59 +0.4 5,189,171 - Psyr_4337 0.59 +1.6 5,189,171 - Psyr_4337 0.59 -0.3 5,189,171 - Psyr_4337 0.59 +0.6 5,189,195 + Psyr_4337 0.61 -1.8 5,189,195 + Psyr_4337 0.61 -1.3 5,189,195 + Psyr_4337 0.61 +0.4 5,189,195 + Psyr_4337 0.61 -0.0 5,189,195 + Psyr_4337 0.61 +2.0 5,189,196 - Psyr_4337 0.61 -1.1 5,189,196 - Psyr_4337 0.61 +0.2 5,189,196 - Psyr_4337 0.61 -0.2 5,189,196 - Psyr_4337 0.61 +0.7 5,189,196 - Psyr_4337 0.61 +0.5 5,189,279 + Psyr_4337 0.67 -0.6 5,189,279 + Psyr_4337 0.67 +0.5 5,189,279 + Psyr_4337 0.67 -0.5 5,189,279 + Psyr_4337 0.67 -0.1 5,189,279 + Psyr_4337 0.67 +0.9 5,189,280 - Psyr_4337 0.67 -0.9 5,189,396 + Psyr_4337 0.75 -0.2 5,189,396 + Psyr_4337 0.75 +0.3 5,189,396 + Psyr_4337 0.75 -1.7 5,189,397 - Psyr_4337 0.75 -2.7 5,189,397 - Psyr_4337 0.75 -0.8 5,189,397 - Psyr_4337 0.75 +1.5 5,189,484 - Psyr_4337 0.81 +1.0 5,189,484 - Psyr_4337 0.81 +0.9 5,189,522 + Psyr_4337 0.83 +1.0 5,189,523 - Psyr_4337 0.83 -0.6 5,189,523 - Psyr_4337 0.83 +1.4 5,189,523 - Psyr_4337 0.83 -0.1 5,189,523 - Psyr_4337 0.83 -0.6 5,189,523 - Psyr_4337 0.83 +1.1 5,189,588 + Psyr_4337 0.88 +0.0 5,189,588 + Psyr_4337 0.88 +1.2 5,189,588 + Psyr_4337 0.88 +1.0 5,189,589 - Psyr_4337 0.88 -0.4 5,189,589 - Psyr_4337 0.88 -1.5 5,189,589 - Psyr_4337 0.88 +0.4 5,189,589 - Psyr_4337 0.88 +1.2 5,189,660 + +0.1 5,189,661 - +0.0 5,189,722 + -0.4 5,189,722 + +4.0 5,189,859 - +1.0 5,190,241 - Psyr_4338 0.26 +0.3 5,190,241 - Psyr_4338 0.26 -0.0 5,190,306 + Psyr_4338 0.30 +0.0 5,190,306 + Psyr_4338 0.30 -0.7 5,190,307 - Psyr_4338 0.30 +0.9 5,190,307 - Psyr_4338 0.30 -0.1 5,190,307 - Psyr_4338 0.30 +0.6 5,190,307 - Psyr_4338 0.30 +1.2 5,190,696 + Psyr_4338 0.53 -0.1 5,190,696 + Psyr_4338 0.53 -1.1 5,190,696 + Psyr_4338 0.53 -1.1 5,190,697 - Psyr_4338 0.53 +0.1 5,190,814 + Psyr_4338 0.60 +0.0 5,190,814 + Psyr_4338 0.60 -0.7 5,190,814 + Psyr_4338 0.60 +0.4 5,190,814 + Psyr_4338 0.60 +0.4 5,190,814 + Psyr_4338 0.60 -0.4 5,190,815 - Psyr_4338 0.60 +0.0 5,190,831 + Psyr_4338 0.61 +0.3 5,190,832 - Psyr_4338 0.61 -0.0 5,190,972 + Psyr_4338 0.70 -0.9 5,190,973 - Psyr_4338 0.70 -0.4 5,191,098 + Psyr_4338 0.78 +0.9 5,191,098 + Psyr_4338 0.78 +0.4 5,191,098 + Psyr_4338 0.78 +3.0 5,191,098 + Psyr_4338 0.78 -0.3 5,191,098 + Psyr_4338 0.78 -0.8 5,191,098 + Psyr_4338 0.78 -0.6 5,191,098 + Psyr_4338 0.78 -1.6 5,191,098 + Psyr_4338 0.78 -0.1 5,191,099 - Psyr_4338 0.78 +0.1 5,191,099 - Psyr_4338 0.78 -2.3 5,191,099 - Psyr_4338 0.78 -0.6 5,191,197 + Psyr_4338 0.84 -0.5 5,191,198 - Psyr_4338 0.84 -0.7 5,191,321 - -1.1 5,191,488 + -0.8 5,191,488 + +1.0 5,191,488 + +3.4 5,191,488 + +0.0 5,191,489 - +0.7 5,191,489 - +1.0 5,191,489 - +2.0 5,191,489 - -0.1 5,191,489 - +3.0 5,191,489 - +0.6 5,191,489 - -0.9 5,191,499 + -0.6 5,191,499 + -2.1 5,191,500 - +0.1 5,191,566 + +0.1 5,191,567 - +0.2 5,191,580 + +0.8 5,191,581 - +1.0 5,191,581 - +0.2 5,191,592 + +3.0 5,191,592 + +0.9 5,191,593 - +1.3 5,191,593 - +0.3 5,191,593 - +1.5 5,191,594 + +1.1 5,191,594 + -0.8 5,191,594 + -1.2 5,191,595 - -2.2 5,191,595 - +0.0 5,191,595 - -0.3 5,191,595 - -0.4 5,191,671 + +1.3 5,191,815 - Psyr_4339 0.11 -0.2 5,191,877 + Psyr_4339 0.14 +1.3 5,191,877 + Psyr_4339 0.14 -0.8 5,191,878 - Psyr_4339 0.14 -1.0 5,191,878 - Psyr_4339 0.14 -0.2 5,192,020 - Psyr_4339 0.21 -0.9 5,192,129 + Psyr_4339 0.26 +1.0 5,192,129 + Psyr_4339 0.26 -2.4 5,192,130 - Psyr_4339 0.26 +0.2 5,192,130 - Psyr_4339 0.26 -1.0 5,192,130 - Psyr_4339 0.26 -0.1 5,192,130 - Psyr_4339 0.26 -0.6 5,192,130 - Psyr_4339 0.26 +1.4 5,192,130 - Psyr_4339 0.26 -0.4 5,192,219 + Psyr_4339 0.31 +2.0 5,192,219 + Psyr_4339 0.31 +0.5 5,192,219 + Psyr_4339 0.31 -1.5 5,192,219 + Psyr_4339 0.31 -1.2 5,192,219 + Psyr_4339 0.31 +0.2 5,192,219 + Psyr_4339 0.31 +0.5 5,192,219 + Psyr_4339 0.31 +0.7 5,192,219 + Psyr_4339 0.31 -1.1 5,192,220 - Psyr_4339 0.31 +0.5 5,192,220 - Psyr_4339 0.31 +1.7 5,192,220 - Psyr_4339 0.31 +2.6 5,192,220 - Psyr_4339 0.31 +0.4 5,192,220 - Psyr_4339 0.31 -0.4 5,192,220 - Psyr_4339 0.31 +0.0 5,192,220 - Psyr_4339 0.31 -0.3 5,192,220 - Psyr_4339 0.31 -0.5 5,192,220 - Psyr_4339 0.31 +0.6 5,192,220 - Psyr_4339 0.31 -0.7 5,192,331 + Psyr_4339 0.36 -0.4 5,192,331 + Psyr_4339 0.36 -0.1 5,192,331 + Psyr_4339 0.36 -0.3 5,192,332 - Psyr_4339 0.36 +0.1 5,192,332 - Psyr_4339 0.36 -0.9 5,192,332 - Psyr_4339 0.36 +0.1 5,192,332 - Psyr_4339 0.36 -0.5 5,192,332 - Psyr_4339 0.36 +1.5
Or see this region's nucleotide sequence