Experiment: KB with Chaulmoogric 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3875 and Psyr_3876 overlap by 4 nucleotides Psyr_3876 and Psyr_3877 are separated by 12 nucleotides Psyr_3877 and Psyr_3878 are separated by 9 nucleotides Psyr_3878 and Psyr_3879 are separated by 6 nucleotides
Psyr_3875: Psyr_3875 - amino acid ABC transporter membrane protein 1, PAAT family, at 4,616,271 to 4,616,999
_3875
Psyr_3876: Psyr_3876 - amino acid ABC transporter membrane protein 2, PAAT family, at 4,616,996 to 4,617,706
_3876
Psyr_3877: Psyr_3877 - Succinylglutamate desuccinylase/aspartoacylase, at 4,617,719 to 4,618,837
_3877
Psyr_3878: Psyr_3878 - amino acid ABC transporter ATP-binding protein, PAAT family, at 4,618,847 to 4,619,611
_3878
Psyr_3879: Psyr_3879 - hypothetical protein, at 4,619,618 to 4,620,172
_3879
Position (kb) 4617
4618
4619 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4616.874 kb on + strand, within Psyr_3875 at 4616.875 kb on - strand, within Psyr_3875 at 4616.886 kb on + strand, within Psyr_3875 at 4616.887 kb on - strand, within Psyr_3875 at 4616.887 kb on - strand, within Psyr_3875 at 4616.887 kb on - strand, within Psyr_3875 at 4616.913 kb on + strand, within Psyr_3875 at 4616.913 kb on + strand, within Psyr_3875 at 4616.914 kb on - strand, within Psyr_3875 at 4616.914 kb on - strand, within Psyr_3875 at 4616.914 kb on - strand, within Psyr_3875 at 4616.968 kb on - strand at 4616.968 kb on - strand at 4617.036 kb on - strand at 4617.036 kb on - strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.038 kb on - strand at 4617.038 kb on - strand at 4617.179 kb on + strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.186 kb on - strand, within Psyr_3876 at 4617.186 kb on - strand, within Psyr_3876 at 4617.186 kb on - strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.212 kb on - strand, within Psyr_3876 at 4617.212 kb on - strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.214 kb on + strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.230 kb on + strand, within Psyr_3876 at 4617.231 kb on - strand, within Psyr_3876 at 4617.242 kb on + strand, within Psyr_3876 at 4617.242 kb on + strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.342 kb on - strand, within Psyr_3876 at 4617.342 kb on - strand, within Psyr_3876 at 4617.434 kb on + strand, within Psyr_3876 at 4617.435 kb on - strand, within Psyr_3876 at 4617.440 kb on + strand, within Psyr_3876 at 4617.441 kb on - strand, within Psyr_3876 at 4617.441 kb on - strand, within Psyr_3876 at 4617.482 kb on + strand, within Psyr_3876 at 4617.482 kb on + strand, within Psyr_3876 at 4617.483 kb on - strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.498 kb on + strand, within Psyr_3876 at 4617.498 kb on + strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.624 kb on - strand, within Psyr_3876 at 4617.624 kb on - strand, within Psyr_3876 at 4617.730 kb on + strand at 4617.731 kb on - strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.873 kb on - strand, within Psyr_3877 at 4618.111 kb on - strand, within Psyr_3877 at 4618.253 kb on + strand, within Psyr_3877 at 4618.253 kb on + strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877 at 4618.298 kb on + strand, within Psyr_3877 at 4618.299 kb on - strand, within Psyr_3877 at 4618.508 kb on + strand, within Psyr_3877 at 4618.509 kb on - strand, within Psyr_3877 at 4618.509 kb on - strand, within Psyr_3877 at 4618.739 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.850 kb on + strand at 4618.850 kb on + strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.884 kb on - strand at 4619.240 kb on + strand, within Psyr_3878 at 4619.240 kb on + strand, within Psyr_3878 at 4619.241 kb on - strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.375 kb on - strand, within Psyr_3878 at 4619.375 kb on - strand, within Psyr_3878 at 4619.375 kb on - strand, within Psyr_3878 at 4619.375 kb on - strand, within Psyr_3878 at 4619.505 kb on + strand, within Psyr_3878 at 4619.506 kb on - strand, within Psyr_3878 at 4619.609 kb on + strand at 4619.610 kb on - strand at 4619.610 kb on - strand at 4619.626 kb on + strand at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.686 kb on - strand, within Psyr_3879 at 4619.686 kb on - strand, within Psyr_3879
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM remove 4,616,874 + Psyr_3875 0.83 +0.5 4,616,875 - Psyr_3875 0.83 +2.5 4,616,886 + Psyr_3875 0.84 -0.1 4,616,887 - Psyr_3875 0.84 -0.5 4,616,887 - Psyr_3875 0.84 +1.0 4,616,887 - Psyr_3875 0.84 -0.4 4,616,913 + Psyr_3875 0.88 -0.6 4,616,913 + Psyr_3875 0.88 +0.6 4,616,914 - Psyr_3875 0.88 +0.6 4,616,914 - Psyr_3875 0.88 +1.5 4,616,914 - Psyr_3875 0.88 -0.6 4,616,968 - +0.7 4,616,968 - +2.5 4,617,036 - -0.7 4,617,036 - +0.9 4,617,037 + -0.3 4,617,037 + -0.7 4,617,037 + -0.1 4,617,037 + +0.5 4,617,037 + +0.6 4,617,037 + +1.3 4,617,037 + +0.9 4,617,037 + -0.9 4,617,037 + +0.2 4,617,038 - +2.2 4,617,038 - +0.1 4,617,179 + Psyr_3876 0.26 -0.2 4,617,180 - Psyr_3876 0.26 +0.9 4,617,185 + Psyr_3876 0.27 +0.8 4,617,185 + Psyr_3876 0.27 +0.7 4,617,185 + Psyr_3876 0.27 -0.7 4,617,186 - Psyr_3876 0.27 +1.4 4,617,186 - Psyr_3876 0.27 +0.2 4,617,186 - Psyr_3876 0.27 +0.8 4,617,209 + Psyr_3876 0.30 -0.2 4,617,209 + Psyr_3876 0.30 -0.5 4,617,209 + Psyr_3876 0.30 +2.8 4,617,209 + Psyr_3876 0.30 -2.0 4,617,209 + Psyr_3876 0.30 +0.5 4,617,209 + Psyr_3876 0.30 -0.1 4,617,209 + Psyr_3876 0.30 -1.4 4,617,209 + Psyr_3876 0.30 -0.2 4,617,209 + Psyr_3876 0.30 -0.7 4,617,209 + Psyr_3876 0.30 +0.6 4,617,209 + Psyr_3876 0.30 +0.2 4,617,209 + Psyr_3876 0.30 -1.1 4,617,210 - Psyr_3876 0.30 +0.4 4,617,210 - Psyr_3876 0.30 -1.7 4,617,210 - Psyr_3876 0.30 -0.7 4,617,210 - Psyr_3876 0.30 -0.8 4,617,210 - Psyr_3876 0.30 +0.5 4,617,210 - Psyr_3876 0.30 +0.0 4,617,210 - Psyr_3876 0.30 -1.5 4,617,210 - Psyr_3876 0.30 -0.7 4,617,210 - Psyr_3876 0.30 +1.5 4,617,210 - Psyr_3876 0.30 -2.6 4,617,210 - Psyr_3876 0.30 -0.6 4,617,210 - Psyr_3876 0.30 -2.4 4,617,211 + Psyr_3876 0.30 -0.0 4,617,211 + Psyr_3876 0.30 -0.4 4,617,212 - Psyr_3876 0.30 +2.9 4,617,212 - Psyr_3876 0.30 +1.6 4,617,213 + Psyr_3876 0.31 +0.1 4,617,213 + Psyr_3876 0.31 +0.1 4,617,213 + Psyr_3876 0.31 -0.4 4,617,213 + Psyr_3876 0.31 -0.2 4,617,213 + Psyr_3876 0.31 +1.7 4,617,213 + Psyr_3876 0.31 +0.1 4,617,213 + Psyr_3876 0.31 -0.9 4,617,213 + Psyr_3876 0.31 +0.6 4,617,213 + Psyr_3876 0.31 +1.9 4,617,213 + Psyr_3876 0.31 +0.1 4,617,214 + Psyr_3876 0.31 -0.4 4,617,214 - Psyr_3876 0.31 +0.9 4,617,214 - Psyr_3876 0.31 -1.2 4,617,214 - Psyr_3876 0.31 -2.4 4,617,214 - Psyr_3876 0.31 +0.5 4,617,214 - Psyr_3876 0.31 -0.9 4,617,214 - Psyr_3876 0.31 +0.8 4,617,214 - Psyr_3876 0.31 -2.0 4,617,214 - Psyr_3876 0.31 -0.2 4,617,214 - Psyr_3876 0.31 +0.3 4,617,214 - Psyr_3876 0.31 -0.9 4,617,214 - Psyr_3876 0.31 +2.0 4,617,214 - Psyr_3876 0.31 +0.6 4,617,214 - Psyr_3876 0.31 -0.2 4,617,214 - Psyr_3876 0.31 -0.4 4,617,214 - Psyr_3876 0.31 +1.8 4,617,214 - Psyr_3876 0.31 +1.7 4,617,214 - Psyr_3876 0.31 +0.6 4,617,230 + Psyr_3876 0.33 +0.7 4,617,231 - Psyr_3876 0.33 +0.1 4,617,242 + Psyr_3876 0.35 +1.3 4,617,242 + Psyr_3876 0.35 -0.2 4,617,243 - Psyr_3876 0.35 -0.5 4,617,243 - Psyr_3876 0.35 -1.5 4,617,243 - Psyr_3876 0.35 -1.5 4,617,243 - Psyr_3876 0.35 -0.8 4,617,342 - Psyr_3876 0.49 -0.1 4,617,342 - Psyr_3876 0.49 +2.5 4,617,434 + Psyr_3876 0.62 -0.5 4,617,435 - Psyr_3876 0.62 +0.0 4,617,440 + Psyr_3876 0.62 +0.1 4,617,441 - Psyr_3876 0.63 +0.6 4,617,441 - Psyr_3876 0.63 +0.9 4,617,482 + Psyr_3876 0.68 -1.0 4,617,482 + Psyr_3876 0.68 -0.1 4,617,483 - Psyr_3876 0.68 +0.6 4,617,495 + Psyr_3876 0.70 -2.9 4,617,495 + Psyr_3876 0.70 +0.5 4,617,495 + Psyr_3876 0.70 +2.4 4,617,495 + Psyr_3876 0.70 +0.8 4,617,495 + Psyr_3876 0.70 +0.7 4,617,496 - Psyr_3876 0.70 -2.4 4,617,496 - Psyr_3876 0.70 +0.4 4,617,496 - Psyr_3876 0.70 +0.9 4,617,496 - Psyr_3876 0.70 -0.2 4,617,496 - Psyr_3876 0.70 -0.5 4,617,496 - Psyr_3876 0.70 -2.2 4,617,496 - Psyr_3876 0.70 +0.9 4,617,496 - Psyr_3876 0.70 +0.6 4,617,498 + Psyr_3876 0.71 +1.3 4,617,498 + Psyr_3876 0.71 +0.0 4,617,499 - Psyr_3876 0.71 +0.0 4,617,499 - Psyr_3876 0.71 -0.1 4,617,499 - Psyr_3876 0.71 +3.2 4,617,623 + Psyr_3876 0.88 -0.7 4,617,623 + Psyr_3876 0.88 -0.8 4,617,623 + Psyr_3876 0.88 -0.4 4,617,623 + Psyr_3876 0.88 +0.1 4,617,624 - Psyr_3876 0.88 +0.2 4,617,624 - Psyr_3876 0.88 -0.3 4,617,730 + -1.1 4,617,731 - -0.1 4,617,818 + +0.9 4,617,818 + -1.5 4,617,818 + -0.7 4,617,818 + +0.5 4,617,818 + -0.5 4,617,818 + -0.4 4,617,818 + +0.7 4,617,819 - -0.3 4,617,819 - -0.8 4,617,819 - +0.8 4,617,819 - -1.6 4,617,819 - +1.2 4,617,819 - +0.3 4,617,819 - -2.2 4,617,819 - -0.9 4,617,873 - Psyr_3877 0.14 +0.1 4,618,111 - Psyr_3877 0.35 +0.2 4,618,253 + Psyr_3877 0.48 -0.3 4,618,253 + Psyr_3877 0.48 +0.9 4,618,254 - Psyr_3877 0.48 -0.9 4,618,254 - Psyr_3877 0.48 -0.0 4,618,254 - Psyr_3877 0.48 +0.9 4,618,254 - Psyr_3877 0.48 +0.9 4,618,298 + Psyr_3877 0.52 +0.7 4,618,299 - Psyr_3877 0.52 +1.0 4,618,508 + Psyr_3877 0.71 +1.9 4,618,509 - Psyr_3877 0.71 -0.6 4,618,509 - Psyr_3877 0.71 -1.1 4,618,739 + -0.6 4,618,824 + -0.2 4,618,824 + +0.1 4,618,824 + +2.9 4,618,824 + +1.8 4,618,824 + +0.6 4,618,824 + +0.1 4,618,825 - -2.2 4,618,825 - +0.0 4,618,825 - +1.9 4,618,825 - -0.6 4,618,825 - +0.8 4,618,825 - -0.4 4,618,825 - -0.4 4,618,825 - +2.5 4,618,825 - +0.8 4,618,825 - +0.3 4,618,825 - +0.7 4,618,825 - -0.9 4,618,850 + -0.1 4,618,850 + +1.5 4,618,851 - +2.8 4,618,851 - -0.9 4,618,851 - +0.8 4,618,851 - -3.8 4,618,851 - -0.1 4,618,851 - -0.3 4,618,884 - -0.5 4,619,240 + Psyr_3878 0.51 -0.9 4,619,240 + Psyr_3878 0.51 +0.9 4,619,241 - Psyr_3878 0.52 -0.3 4,619,374 + Psyr_3878 0.69 +1.1 4,619,374 + Psyr_3878 0.69 +1.4 4,619,374 + Psyr_3878 0.69 -2.2 4,619,374 + Psyr_3878 0.69 -1.2 4,619,374 + Psyr_3878 0.69 -1.0 4,619,374 + Psyr_3878 0.69 -0.8 4,619,374 + Psyr_3878 0.69 +0.1 4,619,375 - Psyr_3878 0.69 +0.9 4,619,375 - Psyr_3878 0.69 -0.0 4,619,375 - Psyr_3878 0.69 +0.8 4,619,375 - Psyr_3878 0.69 -0.3 4,619,505 + Psyr_3878 0.86 -1.2 4,619,506 - Psyr_3878 0.86 +0.4 4,619,609 + +0.3 4,619,610 - -1.5 4,619,610 - +0.2 4,619,626 + -0.2 4,619,685 + Psyr_3879 0.12 +3.7 4,619,685 + Psyr_3879 0.12 -0.4 4,619,685 + Psyr_3879 0.12 +1.0 4,619,685 + Psyr_3879 0.12 +1.3 4,619,685 + Psyr_3879 0.12 +0.3 4,619,685 + Psyr_3879 0.12 -1.2 4,619,686 - Psyr_3879 0.12 +1.0 4,619,686 - Psyr_3879 0.12 -0.8
Or see this region's nucleotide sequence