Experiment: R2A with Tricalcium phosphate 0.5 g/L
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000417 and ABIE53_000418 are separated by 542 nucleotides ABIE53_000418 and ABIE53_000419 are separated by 112 nucleotides
ABIE53_000417: ABIE53_000417 - acetylglutamate kinase, at 450,701 to 451,600
_000417
ABIE53_000418: ABIE53_000418 - Flp pilus assembly protein TadD, at 452,143 to 453,771
_000418
ABIE53_000419: ABIE53_000419 - two-component system sensor histidine kinase RegB, at 453,884 to 455,194
_000419
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 451.628 kb on - strand at 451.628 kb on - strand at 451.645 kb on - strand at 451.645 kb on - strand at 451.715 kb on + strand at 451.715 kb on + strand at 451.715 kb on + strand at 451.716 kb on - strand at 451.716 kb on - strand at 451.756 kb on - strand at 451.783 kb on - strand at 451.783 kb on - strand at 451.783 kb on - strand at 451.805 kb on - strand at 452.097 kb on + strand at 452.097 kb on + strand at 452.097 kb on + strand at 452.098 kb on - strand at 452.098 kb on - strand at 452.137 kb on + strand at 452.137 kb on + strand at 452.137 kb on + strand at 452.138 kb on - strand at 452.138 kb on - strand at 452.138 kb on - strand at 452.145 kb on - strand at 452.145 kb on - strand at 452.153 kb on - strand at 452.153 kb on - strand at 452.240 kb on + strand at 452.241 kb on - strand at 452.259 kb on - strand at 452.373 kb on + strand, within ABIE53_000418 at 452.438 kb on + strand, within ABIE53_000418 at 452.438 kb on + strand, within ABIE53_000418 at 452.438 kb on + strand, within ABIE53_000418 at 452.438 kb on + strand, within ABIE53_000418 at 452.439 kb on - strand, within ABIE53_000418 at 452.439 kb on - strand, within ABIE53_000418 at 452.439 kb on - strand, within ABIE53_000418 at 452.439 kb on - strand, within ABIE53_000418 at 452.507 kb on + strand, within ABIE53_000418 at 452.507 kb on + strand, within ABIE53_000418 at 452.507 kb on + strand, within ABIE53_000418 at 452.507 kb on + strand, within ABIE53_000418 at 452.508 kb on + strand, within ABIE53_000418 at 452.508 kb on - strand, within ABIE53_000418 at 452.546 kb on + strand, within ABIE53_000418 at 452.546 kb on + strand, within ABIE53_000418 at 452.547 kb on - strand, within ABIE53_000418 at 452.547 kb on - strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.685 kb on - strand, within ABIE53_000418 at 452.685 kb on - strand, within ABIE53_000418 at 452.685 kb on - strand, within ABIE53_000418 at 452.685 kb on - strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.892 kb on - strand, within ABIE53_000418 at 452.892 kb on - strand, within ABIE53_000418 at 452.892 kb on - strand, within ABIE53_000418 at 452.892 kb on - strand, within ABIE53_000418 at 452.912 kb on + strand, within ABIE53_000418 at 452.913 kb on - strand, within ABIE53_000418 at 452.913 kb on - strand, within ABIE53_000418 at 452.913 kb on - strand, within ABIE53_000418 at 452.913 kb on - strand, within ABIE53_000418 at 452.956 kb on + strand, within ABIE53_000418 at 452.957 kb on - strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.303 kb on - strand, within ABIE53_000418 at 453.430 kb on + strand, within ABIE53_000418 at 453.564 kb on + strand, within ABIE53_000418 at 453.564 kb on + strand, within ABIE53_000418 at 453.564 kb on + strand, within ABIE53_000418 at 453.565 kb on - strand, within ABIE53_000418 at 453.565 kb on - strand, within ABIE53_000418 at 453.565 kb on - strand, within ABIE53_000418 at 453.739 kb on - strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.821 kb on - strand at 453.821 kb on - strand at 453.821 kb on - strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.824 kb on - strand at 453.824 kb on - strand at 453.824 kb on - strand at 453.824 kb on - strand at 453.846 kb on - strand at 453.867 kb on + strand at 453.892 kb on + strand at 453.892 kb on + strand at 453.894 kb on + strand at 453.895 kb on - strand at 453.895 kb on - strand at 453.895 kb on - strand at 454.337 kb on + strand, within ABIE53_000419
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tricalcium phosphate 0.5 g/L remove 451,628 - -1.2 451,628 - -0.4 451,645 - +0.4 451,645 - -0.1 451,715 + +1.0 451,715 + -0.9 451,715 + -1.2 451,716 - -0.2 451,716 - +3.2 451,756 - +0.4 451,783 - -2.1 451,783 - -0.6 451,783 - -1.2 451,805 - -0.4 452,097 + -1.7 452,097 + -0.1 452,097 + -0.8 452,098 - -0.6 452,098 - +1.7 452,137 + -0.2 452,137 + -0.7 452,137 + +0.6 452,138 - -0.7 452,138 - +0.4 452,138 - -0.2 452,145 - +2.4 452,145 - -1.6 452,153 - +0.2 452,153 - -0.5 452,240 + -2.6 452,241 - -0.3 452,259 - -2.4 452,373 + ABIE53_000418 0.14 +1.6 452,438 + ABIE53_000418 0.18 -0.2 452,438 + ABIE53_000418 0.18 -1.2 452,438 + ABIE53_000418 0.18 -1.1 452,438 + ABIE53_000418 0.18 -0.2 452,439 - ABIE53_000418 0.18 +0.8 452,439 - ABIE53_000418 0.18 +0.4 452,439 - ABIE53_000418 0.18 -2.9 452,439 - ABIE53_000418 0.18 -0.4 452,507 + ABIE53_000418 0.22 +1.4 452,507 + ABIE53_000418 0.22 +0.0 452,507 + ABIE53_000418 0.22 +0.4 452,507 + ABIE53_000418 0.22 -0.2 452,508 + ABIE53_000418 0.22 +0.1 452,508 - ABIE53_000418 0.22 -0.4 452,546 + ABIE53_000418 0.25 -0.6 452,546 + ABIE53_000418 0.25 -0.8 452,547 - ABIE53_000418 0.25 -1.2 452,547 - ABIE53_000418 0.25 -0.0 452,684 + ABIE53_000418 0.33 -0.5 452,684 + ABIE53_000418 0.33 +0.2 452,684 + ABIE53_000418 0.33 +0.6 452,684 + ABIE53_000418 0.33 +0.7 452,684 + ABIE53_000418 0.33 +0.1 452,684 + ABIE53_000418 0.33 -0.8 452,685 - ABIE53_000418 0.33 -0.8 452,685 - ABIE53_000418 0.33 -0.5 452,685 - ABIE53_000418 0.33 -0.3 452,685 - ABIE53_000418 0.33 +1.4 452,891 + ABIE53_000418 0.46 +0.5 452,891 + ABIE53_000418 0.46 +0.5 452,891 + ABIE53_000418 0.46 +1.7 452,891 + ABIE53_000418 0.46 +1.0 452,891 + ABIE53_000418 0.46 -0.6 452,892 - ABIE53_000418 0.46 +2.0 452,892 - ABIE53_000418 0.46 -0.1 452,892 - ABIE53_000418 0.46 -0.5 452,892 - ABIE53_000418 0.46 -1.6 452,912 + ABIE53_000418 0.47 +1.4 452,913 - ABIE53_000418 0.47 +0.5 452,913 - ABIE53_000418 0.47 -3.1 452,913 - ABIE53_000418 0.47 -0.9 452,913 - ABIE53_000418 0.47 +0.5 452,956 + ABIE53_000418 0.50 -1.2 452,957 - ABIE53_000418 0.50 -0.9 453,212 + ABIE53_000418 0.66 -0.8 453,212 + ABIE53_000418 0.66 +0.4 453,212 + ABIE53_000418 0.66 +0.2 453,212 + ABIE53_000418 0.66 -0.9 453,212 + ABIE53_000418 0.66 +0.6 453,212 + ABIE53_000418 0.66 -0.2 453,212 + ABIE53_000418 0.66 -2.5 453,212 + ABIE53_000418 0.66 +3.4 453,212 + ABIE53_000418 0.66 +0.6 453,212 + ABIE53_000418 0.66 -2.3 453,213 - ABIE53_000418 0.66 -0.3 453,213 - ABIE53_000418 0.66 -1.0 453,213 - ABIE53_000418 0.66 +0.0 453,213 - ABIE53_000418 0.66 -0.6 453,213 - ABIE53_000418 0.66 -1.0 453,213 - ABIE53_000418 0.66 +1.2 453,213 - ABIE53_000418 0.66 +0.1 453,213 - ABIE53_000418 0.66 +0.9 453,213 - ABIE53_000418 0.66 -1.2 453,213 - ABIE53_000418 0.66 -2.4 453,213 - ABIE53_000418 0.66 -0.4 453,213 - ABIE53_000418 0.66 +0.4 453,213 - ABIE53_000418 0.66 -1.4 453,213 - ABIE53_000418 0.66 +0.1 453,213 - ABIE53_000418 0.66 +0.8 453,213 - ABIE53_000418 0.66 +2.7 453,213 - ABIE53_000418 0.66 +1.2 453,213 - ABIE53_000418 0.66 +1.4 453,213 - ABIE53_000418 0.66 -0.2 453,213 - ABIE53_000418 0.66 +0.6 453,213 - ABIE53_000418 0.66 -1.2 453,303 - ABIE53_000418 0.71 -0.6 453,430 + ABIE53_000418 0.79 +0.7 453,564 + ABIE53_000418 0.87 -1.7 453,564 + ABIE53_000418 0.87 +0.7 453,564 + ABIE53_000418 0.87 +0.1 453,565 - ABIE53_000418 0.87 -1.4 453,565 - ABIE53_000418 0.87 -1.0 453,565 - ABIE53_000418 0.87 -2.3 453,739 - +1.4 453,818 + -1.4 453,818 + +1.2 453,818 + -0.0 453,818 + +0.6 453,818 + -0.0 453,818 + +0.2 453,818 + -0.5 453,818 + -0.4 453,818 + +0.1 453,818 + +0.2 453,819 - -1.1 453,819 - +0.4 453,819 - -0.4 453,819 - +1.1 453,819 - +0.4 453,819 - -0.9 453,819 - -0.2 453,819 - -1.8 453,819 - -1.7 453,819 - +0.9 453,819 - +0.4 453,819 - +1.2 453,819 - +0.7 453,820 + -0.8 453,820 + -1.7 453,820 + +1.4 453,820 + -0.8 453,820 + -1.2 453,820 + -0.4 453,821 - -0.3 453,821 - +2.4 453,821 - -0.6 453,823 + -0.4 453,823 + -2.0 453,823 + +0.5 453,823 + +0.4 453,823 + +2.0 453,823 + +1.1 453,823 + -0.4 453,824 - -1.8 453,824 - -0.3 453,824 - +1.4 453,824 - -1.5 453,846 - -3.1 453,867 + -0.2 453,892 + -0.8 453,892 + -0.3 453,894 + +0.4 453,895 - -0.4 453,895 - -0.8 453,895 - -1.2 454,337 + ABIE53_000419 0.35 +0.4
Or see this region's nucleotide sequence