Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4454

Experiment: KB with Sclareolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4452 and Psyr_4453 are separated by 21 nucleotidesPsyr_4453 and Psyr_4454 are separated by 25 nucleotidesPsyr_4454 and Psyr_4455 are separated by 41 nucleotidesPsyr_4455 and Psyr_4456 overlap by 4 nucleotides Psyr_4452: Psyr_4452 - Urease accessory protein UreF, at 5,317,743 to 5,318,417 _4452 Psyr_4453: Psyr_4453 - Urease accessory protein UreG, at 5,318,439 to 5,319,056 _4453 Psyr_4454: Psyr_4454 - HupE/UreJ protein, at 5,319,082 to 5,319,654 _4454 Psyr_4455: Psyr_4455 - conserved hypothetical protein, at 5,319,696 to 5,320,115 _4455 Psyr_4456: Psyr_4456 - GTP cyclohydrolase II, at 5,320,112 to 5,320,777 _4456 Position (kb) 5319 5320Strain fitness (log2 ratio) -2 -1 0 1 2at 5318.394 kb on + strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.536 kb on - strand, within Psyr_4453at 5318.536 kb on - strand, within Psyr_4453at 5318.561 kb on + strand, within Psyr_4453at 5318.561 kb on + strand, within Psyr_4453at 5318.562 kb on - strand, within Psyr_4453at 5318.562 kb on - strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.807 kb on - strand, within Psyr_4453at 5318.807 kb on - strand, within Psyr_4453at 5318.807 kb on - strand, within Psyr_4453at 5319.088 kb on + strandat 5319.404 kb on + strand, within Psyr_4454at 5319.404 kb on + strand, within Psyr_4454at 5319.405 kb on - strand, within Psyr_4454at 5319.405 kb on - strand, within Psyr_4454at 5319.722 kb on - strandat 5319.727 kb on + strandat 5319.727 kb on + strandat 5319.728 kb on - strandat 5319.728 kb on - strandat 5319.926 kb on - strand, within Psyr_4455at 5319.963 kb on + strand, within Psyr_4455at 5319.963 kb on + strand, within Psyr_4455at 5319.963 kb on + strand, within Psyr_4455at 5320.026 kb on + strand, within Psyr_4455

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM
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5,318,394 + +1.1
5,318,395 - +1.9
5,318,395 - -0.0
5,318,395 - -0.2
5,318,395 - -0.1
5,318,536 - Psyr_4453 0.16 +1.6
5,318,536 - Psyr_4453 0.16 -2.3
5,318,561 + Psyr_4453 0.20 -0.5
5,318,561 + Psyr_4453 0.20 +0.8
5,318,562 - Psyr_4453 0.20 -0.8
5,318,562 - Psyr_4453 0.20 -0.4
5,318,565 + Psyr_4453 0.20 +1.2
5,318,565 + Psyr_4453 0.20 -0.8
5,318,565 + Psyr_4453 0.20 +1.1
5,318,565 + Psyr_4453 0.20 +0.1
5,318,565 + Psyr_4453 0.20 -1.8
5,318,565 + Psyr_4453 0.20 -0.3
5,318,565 + Psyr_4453 0.20 -0.1
5,318,565 + Psyr_4453 0.20 -1.5
5,318,565 + Psyr_4453 0.20 -2.7
5,318,565 + Psyr_4453 0.20 -0.5
5,318,565 + Psyr_4453 0.20 -1.0
5,318,565 + Psyr_4453 0.20 +1.1
5,318,565 + Psyr_4453 0.20 +1.1
5,318,565 + Psyr_4453 0.20 -0.0
5,318,565 + Psyr_4453 0.20 +0.8
5,318,565 + Psyr_4453 0.20 -0.5
5,318,565 + Psyr_4453 0.20 -0.5
5,318,565 + Psyr_4453 0.20 +1.2
5,318,565 + Psyr_4453 0.20 +0.5
5,318,566 - Psyr_4453 0.21 +0.6
5,318,566 - Psyr_4453 0.21 -0.3
5,318,566 - Psyr_4453 0.21 -0.4
5,318,566 - Psyr_4453 0.21 +0.7
5,318,566 - Psyr_4453 0.21 -0.6
5,318,566 - Psyr_4453 0.21 +0.3
5,318,566 - Psyr_4453 0.21 -0.6
5,318,566 - Psyr_4453 0.21 +0.2
5,318,566 - Psyr_4453 0.21 +0.2
5,318,566 - Psyr_4453 0.21 -0.4
5,318,566 - Psyr_4453 0.21 +0.5
5,318,566 - Psyr_4453 0.21 +0.2
5,318,566 - Psyr_4453 0.21 +0.4
5,318,566 - Psyr_4453 0.21 +0.5
5,318,566 - Psyr_4453 0.21 -0.1
5,318,566 - Psyr_4453 0.21 +0.2
5,318,566 - Psyr_4453 0.21 -0.9
5,318,566 - Psyr_4453 0.21 +0.5
5,318,566 - Psyr_4453 0.21 -0.3
5,318,566 - Psyr_4453 0.21 -0.4
5,318,802 + Psyr_4453 0.59 -0.5
5,318,802 + Psyr_4453 0.59 +0.5
5,318,802 + Psyr_4453 0.59 -0.5
5,318,802 + Psyr_4453 0.59 -1.8
5,318,802 + Psyr_4453 0.59 -0.4
5,318,802 + Psyr_4453 0.59 +0.4
5,318,802 + Psyr_4453 0.59 -0.9
5,318,802 + Psyr_4453 0.59 +0.6
5,318,802 + Psyr_4453 0.59 +1.1
5,318,802 + Psyr_4453 0.59 +0.2
5,318,802 + Psyr_4453 0.59 +0.2
5,318,802 + Psyr_4453 0.59 -0.2
5,318,803 - Psyr_4453 0.59 +0.2
5,318,803 - Psyr_4453 0.59 +0.1
5,318,803 - Psyr_4453 0.59 +0.1
5,318,803 - Psyr_4453 0.59 -0.3
5,318,803 - Psyr_4453 0.59 +0.7
5,318,803 - Psyr_4453 0.59 -0.7
5,318,803 - Psyr_4453 0.59 -0.3
5,318,807 - Psyr_4453 0.60 +1.4
5,318,807 - Psyr_4453 0.60 +0.3
5,318,807 - Psyr_4453 0.60 +0.2
5,319,088 + +0.1
5,319,404 + Psyr_4454 0.56 +0.7
5,319,404 + Psyr_4454 0.56 -0.8
5,319,405 - Psyr_4454 0.56 +1.3
5,319,405 - Psyr_4454 0.56 +1.0
5,319,722 - +0.2
5,319,727 + -0.7
5,319,727 + -1.6
5,319,728 - +1.4
5,319,728 - -1.6
5,319,926 - Psyr_4455 0.55 +0.3
5,319,963 + Psyr_4455 0.64 +0.6
5,319,963 + Psyr_4455 0.64 -1.2
5,319,963 + Psyr_4455 0.64 -1.3
5,320,026 + Psyr_4455 0.79 +0.1

Or see this region's nucleotide sequence