Experiment: KB with Sclareolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3787 and Psyr_3788 are separated by 144 nucleotides Psyr_3788 and Psyr_3789 are separated by 69 nucleotides Psyr_3789 and Psyr_3790 are separated by 608 nucleotides
Psyr_3787: Psyr_3787 - conserved hypothetical protein, at 4,503,341 to 4,503,907
_3787
Psyr_3788: Psyr_3788 - Conserved hypothetical protein 2001, at 4,504,052 to 4,504,780
_3788
Psyr_3789: Psyr_3789 - lipoprotein, putative, at 4,504,850 to 4,505,713
_3789
Psyr_3790: Psyr_3790 - conserved hypothetical protein, at 4,506,322 to 4,506,624
_3790
Position (kb) 4504
4505
4506 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4503.970 kb on + strand at 4503.971 kb on - strand at 4504.069 kb on - strand at 4504.069 kb on - strand at 4504.069 kb on - strand at 4504.262 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.365 kb on - strand, within Psyr_3788 at 4504.365 kb on - strand, within Psyr_3788 at 4504.392 kb on - strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.715 kb on + strand at 4504.716 kb on - strand at 4504.757 kb on - strand at 4504.811 kb on - strand at 4504.860 kb on + strand at 4505.064 kb on - strand, within Psyr_3789 at 4505.118 kb on - strand, within Psyr_3789 at 4505.118 kb on - strand, within Psyr_3789 at 4505.137 kb on + strand, within Psyr_3789 at 4505.282 kb on + strand, within Psyr_3789 at 4505.282 kb on + strand, within Psyr_3789 at 4505.283 kb on - strand, within Psyr_3789 at 4505.283 kb on - strand, within Psyr_3789 at 4505.283 kb on - strand, within Psyr_3789 at 4505.329 kb on + strand, within Psyr_3789 at 4505.444 kb on - strand, within Psyr_3789 at 4505.711 kb on + strand at 4505.712 kb on - strand at 4505.712 kb on - strand at 4505.712 kb on - strand at 4505.737 kb on + strand at 4505.737 kb on + strand at 4505.738 kb on - strand at 4505.738 kb on - strand at 4505.797 kb on - strand at 4505.877 kb on + strand at 4505.878 kb on - strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.054 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.205 kb on - strand at 4506.205 kb on - strand at 4506.205 kb on - strand at 4506.205 kb on - strand at 4506.210 kb on + strand at 4506.295 kb on - strand at 4506.295 kb on - strand at 4506.324 kb on - strand at 4506.324 kb on - strand at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.521 kb on + strand, within Psyr_3790 at 4506.521 kb on + strand, within Psyr_3790 at 4506.522 kb on - strand, within Psyr_3790 at 4506.617 kb on + strand at 4506.617 kb on + strand at 4506.617 kb on + strand at 4506.617 kb on + strand at 4506.618 kb on - strand at 4506.618 kb on - strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.629 kb on - strand at 4506.629 kb on - strand at 4506.629 kb on - strand at 4506.629 kb on - strand at 4506.630 kb on + strand at 4506.630 kb on + strand at 4506.630 kb on + strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM remove 4,503,970 + -0.1 4,503,971 - +0.2 4,504,069 - +1.5 4,504,069 - -0.5 4,504,069 - -0.7 4,504,262 + Psyr_3788 0.29 -0.3 4,504,325 + Psyr_3788 0.37 -0.8 4,504,325 + Psyr_3788 0.37 -1.3 4,504,325 + Psyr_3788 0.37 -2.4 4,504,325 + Psyr_3788 0.37 -0.3 4,504,325 + Psyr_3788 0.37 -0.8 4,504,325 + Psyr_3788 0.37 -0.1 4,504,325 + Psyr_3788 0.37 +0.1 4,504,325 + Psyr_3788 0.37 +0.3 4,504,326 - Psyr_3788 0.38 -0.4 4,504,326 - Psyr_3788 0.38 +0.4 4,504,326 - Psyr_3788 0.38 -0.3 4,504,326 - Psyr_3788 0.38 -1.3 4,504,326 - Psyr_3788 0.38 +0.4 4,504,365 - Psyr_3788 0.43 -2.4 4,504,365 - Psyr_3788 0.43 -0.1 4,504,392 - Psyr_3788 0.47 -1.0 4,504,427 + Psyr_3788 0.51 -0.8 4,504,427 + Psyr_3788 0.51 +0.9 4,504,427 + Psyr_3788 0.51 +3.2 4,504,427 + Psyr_3788 0.51 -0.2 4,504,427 + Psyr_3788 0.51 -1.7 4,504,428 - Psyr_3788 0.52 +0.9 4,504,428 - Psyr_3788 0.52 -0.3 4,504,428 - Psyr_3788 0.52 +0.9 4,504,428 - Psyr_3788 0.52 -0.9 4,504,428 - Psyr_3788 0.52 -0.4 4,504,428 - Psyr_3788 0.52 +0.5 4,504,428 - Psyr_3788 0.52 -0.0 4,504,676 + Psyr_3788 0.86 -0.3 4,504,676 + Psyr_3788 0.86 -0.6 4,504,676 + Psyr_3788 0.86 +2.5 4,504,676 + Psyr_3788 0.86 +0.1 4,504,676 + Psyr_3788 0.86 -0.3 4,504,676 + Psyr_3788 0.86 -0.7 4,504,676 + Psyr_3788 0.86 +0.1 4,504,676 + Psyr_3788 0.86 -1.4 4,504,676 + Psyr_3788 0.86 +0.9 4,504,676 + Psyr_3788 0.86 +1.9 4,504,676 + Psyr_3788 0.86 -1.2 4,504,676 + Psyr_3788 0.86 -0.3 4,504,676 + Psyr_3788 0.86 -0.8 4,504,676 + Psyr_3788 0.86 -1.3 4,504,677 - Psyr_3788 0.86 -0.4 4,504,677 - Psyr_3788 0.86 -0.1 4,504,677 - Psyr_3788 0.86 +0.2 4,504,677 - Psyr_3788 0.86 -1.3 4,504,677 - Psyr_3788 0.86 +0.9 4,504,677 - Psyr_3788 0.86 -1.1 4,504,677 - Psyr_3788 0.86 -0.9 4,504,715 + -1.3 4,504,716 - +1.3 4,504,757 - -1.2 4,504,811 - +0.1 4,504,860 + -1.0 4,505,064 - Psyr_3789 0.25 -1.1 4,505,118 - Psyr_3789 0.31 +0.0 4,505,118 - Psyr_3789 0.31 +2.5 4,505,137 + Psyr_3789 0.33 -0.7 4,505,282 + Psyr_3789 0.50 -0.1 4,505,282 + Psyr_3789 0.50 -0.4 4,505,283 - Psyr_3789 0.50 -0.0 4,505,283 - Psyr_3789 0.50 +0.2 4,505,283 - Psyr_3789 0.50 -1.6 4,505,329 + Psyr_3789 0.55 -0.3 4,505,444 - Psyr_3789 0.69 +0.3 4,505,711 + +1.5 4,505,712 - +1.5 4,505,712 - -0.7 4,505,712 - +0.4 4,505,737 + +0.3 4,505,737 + +0.6 4,505,738 - -1.4 4,505,738 - -0.1 4,505,797 - +0.1 4,505,877 + -0.8 4,505,878 - +1.1 4,506,048 + -0.6 4,506,048 + -0.3 4,506,048 + -1.1 4,506,048 + -0.4 4,506,048 + -0.1 4,506,048 + -0.2 4,506,048 + +0.2 4,506,048 + -0.8 4,506,048 + +2.9 4,506,048 + +0.9 4,506,048 + +3.5 4,506,048 + +0.2 4,506,048 + +0.1 4,506,048 + -0.4 4,506,048 + -1.2 4,506,048 + -0.5 4,506,049 - -0.5 4,506,049 - -1.3 4,506,049 - +0.2 4,506,049 - -1.1 4,506,049 - -0.5 4,506,049 - +0.6 4,506,049 - +0.2 4,506,049 - +0.3 4,506,049 - +0.1 4,506,049 - +0.3 4,506,049 - -0.8 4,506,049 - -1.1 4,506,049 - +0.1 4,506,054 + +0.2 4,506,204 + -0.4 4,506,204 + +1.3 4,506,204 + -1.7 4,506,204 + -1.4 4,506,204 + +1.2 4,506,204 + +0.0 4,506,204 + +0.5 4,506,204 + -1.3 4,506,205 - +0.6 4,506,205 - +0.2 4,506,205 - -0.9 4,506,205 - -1.3 4,506,210 + -0.1 4,506,295 - -0.8 4,506,295 - +0.3 4,506,324 - -0.7 4,506,324 - +1.6 4,506,476 + Psyr_3790 0.51 -0.2 4,506,476 + Psyr_3790 0.51 -0.3 4,506,476 + Psyr_3790 0.51 -0.9 4,506,476 + Psyr_3790 0.51 -0.4 4,506,476 + Psyr_3790 0.51 +0.1 4,506,476 + Psyr_3790 0.51 +1.1 4,506,477 - Psyr_3790 0.51 +1.2 4,506,477 - Psyr_3790 0.51 +0.1 4,506,477 - Psyr_3790 0.51 +1.5 4,506,477 - Psyr_3790 0.51 -0.3 4,506,477 - Psyr_3790 0.51 +0.3 4,506,521 + Psyr_3790 0.66 +1.0 4,506,521 + Psyr_3790 0.66 +0.1 4,506,522 - Psyr_3790 0.66 +0.9 4,506,617 + +0.8 4,506,617 + -0.6 4,506,617 + -0.4 4,506,617 + -1.0 4,506,618 - -0.4 4,506,618 - +0.9 4,506,628 + -0.8 4,506,628 + +0.7 4,506,628 + +0.3 4,506,628 + -0.0 4,506,628 + +0.2 4,506,628 + -0.2 4,506,628 + +2.6 4,506,629 - -0.4 4,506,629 - +1.7 4,506,629 - +0.5 4,506,629 - -0.1 4,506,630 + +1.3 4,506,630 + +0.0 4,506,630 + -2.3 4,506,631 - -1.0 4,506,631 - -1.1 4,506,631 - +0.4 4,506,631 - -2.7 4,506,631 - +0.0 4,506,631 - -0.4 4,506,631 - +1.0 4,506,631 - +1.5
Or see this region's nucleotide sequence