Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1253

Experiment: KB with Sclareolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1252 and Psyr_1253 are separated by 109 nucleotidesPsyr_1253 and Psyr_1254 overlap by 13 nucleotidesPsyr_1254 and Psyr_1255 are separated by 110 nucleotides Psyr_1252: Psyr_1252 - Small GTP-binding protein protein domain:GTP-binding protein, at 1,407,732 to 1,409,204 _1252 Psyr_1253: Psyr_1253 - 2-keto-4-methylthiobutyrate aminotransferase apoenzyme, at 1,409,314 to 1,410,462 _1253 Psyr_1254: Psyr_1254 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 1,410,450 to 1,411,241 _1254 Psyr_1255: Psyr_1255 - conserved hypothetical protein, at 1,411,352 to 1,411,789 _1255 Position (kb) 1409 1410 1411Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1409.252 kb on + strandat 1409.260 kb on + strandat 1409.349 kb on + strandat 1409.350 kb on - strandat 1409.350 kb on - strandat 1409.482 kb on + strand, within Psyr_1253at 1409.483 kb on - strand, within Psyr_1253at 1409.545 kb on + strand, within Psyr_1253at 1409.545 kb on + strand, within Psyr_1253at 1409.546 kb on - strand, within Psyr_1253at 1409.668 kb on + strand, within Psyr_1253at 1409.668 kb on + strand, within Psyr_1253at 1409.669 kb on - strand, within Psyr_1253at 1409.677 kb on + strand, within Psyr_1253at 1409.678 kb on - strand, within Psyr_1253at 1409.887 kb on + strand, within Psyr_1253at 1409.887 kb on + strand, within Psyr_1253at 1409.887 kb on + strand, within Psyr_1253at 1409.887 kb on + strand, within Psyr_1253at 1409.887 kb on + strand, within Psyr_1253at 1409.887 kb on + strand, within Psyr_1253at 1409.888 kb on - strand, within Psyr_1253at 1409.888 kb on - strand, within Psyr_1253at 1409.888 kb on - strand, within Psyr_1253at 1409.888 kb on - strand, within Psyr_1253at 1409.888 kb on - strand, within Psyr_1253at 1409.888 kb on - strand, within Psyr_1253at 1409.888 kb on - strand, within Psyr_1253at 1409.908 kb on + strand, within Psyr_1253at 1409.908 kb on + strand, within Psyr_1253at 1409.909 kb on - strand, within Psyr_1253at 1409.909 kb on - strand, within Psyr_1253at 1409.909 kb on - strand, within Psyr_1253at 1409.909 kb on - strand, within Psyr_1253at 1409.909 kb on - strand, within Psyr_1253at 1409.909 kb on - strand, within Psyr_1253at 1409.968 kb on + strand, within Psyr_1253at 1409.969 kb on - strand, within Psyr_1253at 1410.007 kb on + strand, within Psyr_1253at 1410.007 kb on + strand, within Psyr_1253at 1410.008 kb on - strand, within Psyr_1253at 1410.008 kb on - strand, within Psyr_1253at 1410.008 kb on - strand, within Psyr_1253at 1410.008 kb on - strand, within Psyr_1253at 1410.035 kb on - strand, within Psyr_1253at 1410.035 kb on - strand, within Psyr_1253at 1410.085 kb on + strand, within Psyr_1253at 1410.085 kb on + strand, within Psyr_1253at 1410.085 kb on + strand, within Psyr_1253at 1410.085 kb on + strand, within Psyr_1253at 1410.085 kb on + strand, within Psyr_1253at 1410.085 kb on + strand, within Psyr_1253at 1410.086 kb on - strand, within Psyr_1253at 1410.086 kb on - strand, within Psyr_1253at 1410.118 kb on + strand, within Psyr_1253at 1410.118 kb on + strand, within Psyr_1253at 1410.178 kb on + strand, within Psyr_1253at 1410.178 kb on + strand, within Psyr_1253at 1410.179 kb on - strand, within Psyr_1253at 1410.253 kb on + strand, within Psyr_1253at 1410.253 kb on + strand, within Psyr_1253at 1410.254 kb on - strand, within Psyr_1253at 1410.254 kb on - strand, within Psyr_1253at 1410.271 kb on + strand, within Psyr_1253at 1410.271 kb on + strand, within Psyr_1253at 1410.365 kb on - strandat 1410.449 kb on + strandat 1410.449 kb on + strandat 1410.450 kb on - strandat 1410.450 kb on - strandat 1410.450 kb on - strandat 1410.460 kb on + strandat 1410.460 kb on + strandat 1410.460 kb on + strandat 1410.461 kb on - strandat 1410.461 kb on - strandat 1410.550 kb on + strand, within Psyr_1254at 1410.653 kb on + strand, within Psyr_1254at 1410.653 kb on + strand, within Psyr_1254at 1410.653 kb on + strand, within Psyr_1254at 1410.653 kb on + strand, within Psyr_1254at 1410.653 kb on + strand, within Psyr_1254at 1410.653 kb on + strand, within Psyr_1254at 1410.654 kb on - strand, within Psyr_1254at 1410.654 kb on - strand, within Psyr_1254at 1410.654 kb on - strand, within Psyr_1254at 1410.654 kb on - strand, within Psyr_1254at 1410.654 kb on - strand, within Psyr_1254at 1410.661 kb on + strand, within Psyr_1254at 1410.662 kb on - strand, within Psyr_1254at 1410.662 kb on - strand, within Psyr_1254at 1410.667 kb on + strand, within Psyr_1254at 1410.667 kb on + strand, within Psyr_1254at 1410.668 kb on - strand, within Psyr_1254at 1410.687 kb on - strand, within Psyr_1254at 1410.787 kb on - strand, within Psyr_1254at 1410.831 kb on + strand, within Psyr_1254at 1410.831 kb on + strand, within Psyr_1254at 1410.831 kb on + strand, within Psyr_1254at 1410.832 kb on - strand, within Psyr_1254at 1410.897 kb on + strand, within Psyr_1254at 1410.898 kb on - strand, within Psyr_1254at 1410.898 kb on - strand, within Psyr_1254at 1410.954 kb on + strand, within Psyr_1254at 1410.954 kb on + strand, within Psyr_1254at 1410.955 kb on - strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.032 kb on + strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.033 kb on - strand, within Psyr_1254at 1411.080 kb on + strand, within Psyr_1254at 1411.080 kb on + strand, within Psyr_1254at 1411.081 kb on - strand, within Psyr_1254at 1411.229 kb on + strandat 1411.229 kb on + strandat 1411.229 kb on + strandat 1411.230 kb on - strandat 1411.230 kb on - strandat 1411.230 kb on - strandat 1411.233 kb on - strandat 1411.233 kb on - strandat 1411.233 kb on - strandat 1411.239 kb on + strandat 1411.273 kb on - strandat 1411.306 kb on + strandat 1411.306 kb on + strandat 1411.307 kb on - strandat 1411.315 kb on + strandat 1411.315 kb on + strandat 1411.315 kb on + strandat 1411.315 kb on + strandat 1411.315 kb on + strandat 1411.315 kb on + strandat 1411.315 kb on + strandat 1411.315 kb on + strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.316 kb on - strandat 1411.335 kb on - strandat 1411.335 kb on - strandat 1411.335 kb on - strandat 1411.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM
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1,409,252 + -1.1
1,409,260 + -0.2
1,409,349 + -0.8
1,409,350 - -0.2
1,409,350 - -0.5
1,409,482 + Psyr_1253 0.15 +3.8
1,409,483 - Psyr_1253 0.15 -0.3
1,409,545 + Psyr_1253 0.20 +0.1
1,409,545 + Psyr_1253 0.20 +0.7
1,409,546 - Psyr_1253 0.20 +2.0
1,409,668 + Psyr_1253 0.31 +1.0
1,409,668 + Psyr_1253 0.31 +0.5
1,409,669 - Psyr_1253 0.31 +1.0
1,409,677 + Psyr_1253 0.32 -0.4
1,409,678 - Psyr_1253 0.32 -0.4
1,409,887 + Psyr_1253 0.50 +0.5
1,409,887 + Psyr_1253 0.50 +0.5
1,409,887 + Psyr_1253 0.50 -0.1
1,409,887 + Psyr_1253 0.50 +1.2
1,409,887 + Psyr_1253 0.50 +1.3
1,409,887 + Psyr_1253 0.50 +0.3
1,409,888 - Psyr_1253 0.50 +0.4
1,409,888 - Psyr_1253 0.50 +0.6
1,409,888 - Psyr_1253 0.50 +0.4
1,409,888 - Psyr_1253 0.50 +1.7
1,409,888 - Psyr_1253 0.50 +0.1
1,409,888 - Psyr_1253 0.50 +0.2
1,409,888 - Psyr_1253 0.50 +1.1
1,409,908 + Psyr_1253 0.52 +0.6
1,409,908 + Psyr_1253 0.52 -0.0
1,409,909 - Psyr_1253 0.52 +0.1
1,409,909 - Psyr_1253 0.52 +3.3
1,409,909 - Psyr_1253 0.52 -1.5
1,409,909 - Psyr_1253 0.52 -0.3
1,409,909 - Psyr_1253 0.52 +0.1
1,409,909 - Psyr_1253 0.52 +0.2
1,409,968 + Psyr_1253 0.57 +0.5
1,409,969 - Psyr_1253 0.57 +0.4
1,410,007 + Psyr_1253 0.60 -1.5
1,410,007 + Psyr_1253 0.60 +1.4
1,410,008 - Psyr_1253 0.60 -2.2
1,410,008 - Psyr_1253 0.60 -1.2
1,410,008 - Psyr_1253 0.60 +1.0
1,410,008 - Psyr_1253 0.60 +1.7
1,410,035 - Psyr_1253 0.63 +0.5
1,410,035 - Psyr_1253 0.63 +1.0
1,410,085 + Psyr_1253 0.67 +1.0
1,410,085 + Psyr_1253 0.67 -0.1
1,410,085 + Psyr_1253 0.67 +0.8
1,410,085 + Psyr_1253 0.67 -0.3
1,410,085 + Psyr_1253 0.67 +2.0
1,410,085 + Psyr_1253 0.67 +0.1
1,410,086 - Psyr_1253 0.67 -0.5
1,410,086 - Psyr_1253 0.67 -0.2
1,410,118 + Psyr_1253 0.70 -0.8
1,410,118 + Psyr_1253 0.70 +3.0
1,410,178 + Psyr_1253 0.75 +0.1
1,410,178 + Psyr_1253 0.75 -0.9
1,410,179 - Psyr_1253 0.75 -0.6
1,410,253 + Psyr_1253 0.82 -3.0
1,410,253 + Psyr_1253 0.82 +0.5
1,410,254 - Psyr_1253 0.82 +0.6
1,410,254 - Psyr_1253 0.82 -0.9
1,410,271 + Psyr_1253 0.83 -0.5
1,410,271 + Psyr_1253 0.83 +0.8
1,410,365 - +1.0
1,410,449 + -1.9
1,410,449 + -1.4
1,410,450 - +0.4
1,410,450 - -0.8
1,410,450 - +0.1
1,410,460 + -3.9
1,410,460 + +1.0
1,410,460 + -0.9
1,410,461 - -0.7
1,410,461 - +2.3
1,410,550 + Psyr_1254 0.13 +0.5
1,410,653 + Psyr_1254 0.26 +0.4
1,410,653 + Psyr_1254 0.26 +0.4
1,410,653 + Psyr_1254 0.26 +1.1
1,410,653 + Psyr_1254 0.26 -0.3
1,410,653 + Psyr_1254 0.26 +2.5
1,410,653 + Psyr_1254 0.26 +0.6
1,410,654 - Psyr_1254 0.26 -0.9
1,410,654 - Psyr_1254 0.26 +0.6
1,410,654 - Psyr_1254 0.26 +1.5
1,410,654 - Psyr_1254 0.26 +0.1
1,410,654 - Psyr_1254 0.26 -0.1
1,410,661 + Psyr_1254 0.27 +0.7
1,410,662 - Psyr_1254 0.27 -0.0
1,410,662 - Psyr_1254 0.27 -0.8
1,410,667 + Psyr_1254 0.27 -0.3
1,410,667 + Psyr_1254 0.27 +2.5
1,410,668 - Psyr_1254 0.28 -0.4
1,410,687 - Psyr_1254 0.30 +1.0
1,410,787 - Psyr_1254 0.43 +0.7
1,410,831 + Psyr_1254 0.48 -1.2
1,410,831 + Psyr_1254 0.48 +0.0
1,410,831 + Psyr_1254 0.48 -2.4
1,410,832 - Psyr_1254 0.48 +0.2
1,410,897 + Psyr_1254 0.56 +0.1
1,410,898 - Psyr_1254 0.57 +1.1
1,410,898 - Psyr_1254 0.57 +1.0
1,410,954 + Psyr_1254 0.64 -1.0
1,410,954 + Psyr_1254 0.64 -0.5
1,410,955 - Psyr_1254 0.64 +1.2
1,411,032 + Psyr_1254 0.73 +0.3
1,411,032 + Psyr_1254 0.73 -1.6
1,411,032 + Psyr_1254 0.73 +0.8
1,411,032 + Psyr_1254 0.73 -0.2
1,411,032 + Psyr_1254 0.73 -1.0
1,411,032 + Psyr_1254 0.73 +0.1
1,411,032 + Psyr_1254 0.73 -0.7
1,411,032 + Psyr_1254 0.73 +0.2
1,411,032 + Psyr_1254 0.73 -0.4
1,411,033 - Psyr_1254 0.74 -0.6
1,411,033 - Psyr_1254 0.74 +2.3
1,411,033 - Psyr_1254 0.74 -1.3
1,411,033 - Psyr_1254 0.74 +0.3
1,411,033 - Psyr_1254 0.74 -0.9
1,411,033 - Psyr_1254 0.74 -1.0
1,411,033 - Psyr_1254 0.74 -0.2
1,411,033 - Psyr_1254 0.74 +0.1
1,411,033 - Psyr_1254 0.74 +0.7
1,411,033 - Psyr_1254 0.74 -1.6
1,411,033 - Psyr_1254 0.74 -0.4
1,411,033 - Psyr_1254 0.74 +0.0
1,411,033 - Psyr_1254 0.74 +1.0
1,411,033 - Psyr_1254 0.74 -0.0
1,411,080 + Psyr_1254 0.80 -0.5
1,411,080 + Psyr_1254 0.80 -0.9
1,411,081 - Psyr_1254 0.80 +0.8
1,411,229 + -0.0
1,411,229 + +0.6
1,411,229 + +4.3
1,411,230 - -2.0
1,411,230 - -2.0
1,411,230 - +0.5
1,411,233 - -0.8
1,411,233 - -0.0
1,411,233 - -1.0
1,411,239 + -0.4
1,411,273 - -0.0
1,411,306 + -0.6
1,411,306 + +2.0
1,411,307 - -0.2
1,411,315 + +1.8
1,411,315 + +0.2
1,411,315 + +1.0
1,411,315 + +0.2
1,411,315 + +2.0
1,411,315 + -1.4
1,411,315 + -0.3
1,411,315 + -2.3
1,411,316 - +0.2
1,411,316 - -1.4
1,411,316 - -0.0
1,411,316 - -1.0
1,411,316 - +1.1
1,411,316 - -0.4
1,411,316 - +1.3
1,411,316 - +0.7
1,411,316 - -0.9
1,411,316 - +0.1
1,411,316 - +1.0
1,411,316 - +0.1
1,411,316 - +0.2
1,411,316 - -0.6
1,411,316 - -1.7
1,411,316 - -2.0
1,411,335 - -0.6
1,411,335 - +0.2
1,411,335 - +3.8
1,411,361 - -0.9

Or see this region's nucleotide sequence