Experiment: KB with Sclareolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0659 and Psyr_0660 are separated by 436 nucleotides Psyr_0660 and Psyr_0661 are separated by 159 nucleotides
Psyr_0659: Psyr_0659 - transcriptional regulator, LysR family, at 747,153 to 748,076
_0659
Psyr_0660: Psyr_0660 - transcriptional regulator, ArsR family, at 748,513 to 749,205
_0660
Psyr_0661: Psyr_0661 - adenosine deaminase, at 749,365 to 750,318
_0661
Position (kb) 748
749
750 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 747.542 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.716 kb on + strand, within Psyr_0659 at 747.716 kb on + strand, within Psyr_0659 at 747.717 kb on - strand, within Psyr_0659 at 747.717 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.992 kb on + strand at 748.034 kb on + strand at 748.034 kb on + strand at 748.034 kb on + strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.048 kb on + strand at 748.048 kb on + strand at 748.049 kb on - strand at 748.049 kb on - strand at 748.049 kb on - strand at 748.074 kb on + strand at 748.098 kb on + strand at 748.098 kb on + strand at 748.123 kb on + strand at 748.222 kb on - strand at 748.270 kb on + strand at 748.270 kb on + strand at 748.270 kb on + strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.288 kb on + strand at 748.289 kb on - strand at 748.299 kb on - strand at 748.367 kb on + strand at 748.368 kb on - strand at 748.404 kb on - strand at 748.404 kb on - strand at 748.410 kb on + strand at 748.412 kb on + strand at 748.412 kb on + strand at 748.412 kb on + strand at 748.413 kb on - strand at 748.413 kb on - strand at 748.413 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.599 kb on + strand, within Psyr_0660 at 748.599 kb on + strand, within Psyr_0660 at 748.599 kb on + strand, within Psyr_0660 at 748.600 kb on - strand, within Psyr_0660 at 748.792 kb on - strand, within Psyr_0660 at 748.926 kb on - strand, within Psyr_0660 at 748.926 kb on - strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.997 kb on + strand, within Psyr_0660 at 749.257 kb on + strand at 749.367 kb on - strand at 749.444 kb on + strand at 749.444 kb on + strand at 749.444 kb on + strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.472 kb on - strand, within Psyr_0661 at 749.711 kb on + strand, within Psyr_0661 at 749.711 kb on + strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 750.077 kb on + strand, within Psyr_0661 at 750.095 kb on + strand, within Psyr_0661 at 750.095 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.134 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.174 kb on - strand, within Psyr_0661
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM remove 747,542 + Psyr_0659 0.42 -0.5 747,666 + Psyr_0659 0.56 -0.0 747,666 + Psyr_0659 0.56 -0.1 747,666 + Psyr_0659 0.56 +0.9 747,716 + Psyr_0659 0.61 -0.6 747,716 + Psyr_0659 0.61 -1.1 747,717 - Psyr_0659 0.61 +0.6 747,717 - Psyr_0659 0.61 -0.3 747,871 - Psyr_0659 0.78 +1.9 747,871 - Psyr_0659 0.78 -0.5 747,871 - Psyr_0659 0.78 +0.4 747,992 + -0.5 748,034 + -1.5 748,034 + -0.7 748,034 + -2.5 748,035 - +0.1 748,035 - +0.1 748,035 - -3.8 748,035 - -0.6 748,035 - -0.5 748,035 - +0.3 748,035 - -1.3 748,048 + -0.3 748,048 + +1.1 748,049 - -0.7 748,049 - +0.2 748,049 - -1.4 748,074 + +2.2 748,098 + -0.7 748,098 + -0.7 748,123 + -1.2 748,222 - +0.3 748,270 + +0.5 748,270 + +1.5 748,270 + -0.5 748,271 - +0.1 748,271 - +0.1 748,271 - -1.0 748,271 - +3.1 748,271 - -1.2 748,271 - -0.5 748,271 - -1.7 748,271 - -0.0 748,288 + -0.7 748,289 - +2.1 748,299 - -0.0 748,367 + -0.2 748,368 - +1.7 748,404 - +1.1 748,404 - +1.3 748,410 + +0.2 748,412 + +0.5 748,412 + -2.7 748,412 + -0.1 748,413 - -0.6 748,413 - +0.1 748,413 - -0.9 748,423 - -1.1 748,423 - -1.8 748,423 - +0.0 748,423 - +0.1 748,426 + +1.1 748,426 + -1.0 748,426 + -1.5 748,426 + -0.0 748,426 + +0.3 748,426 + -0.8 748,426 + -0.4 748,426 + +1.0 748,426 + +1.3 748,427 - -0.1 748,427 - -0.1 748,427 - -1.1 748,427 - +0.3 748,427 - -0.7 748,428 + +0.3 748,428 + -0.8 748,428 + +1.1 748,428 + -3.2 748,428 + +0.6 748,429 - -0.2 748,429 - -0.0 748,429 - +0.4 748,429 - -0.3 748,429 - -0.2 748,429 - -0.2 748,483 + +1.7 748,483 + +0.7 748,483 + +0.1 748,483 + -1.7 748,483 + -1.4 748,484 - +0.5 748,484 - -0.8 748,484 - +0.5 748,484 - +2.6 748,484 - +1.4 748,484 - -1.0 748,484 - -0.2 748,484 - +0.1 748,599 + Psyr_0660 0.12 -0.3 748,599 + Psyr_0660 0.12 -1.5 748,599 + Psyr_0660 0.12 +1.1 748,600 - Psyr_0660 0.13 +2.1 748,792 - Psyr_0660 0.40 -0.3 748,926 - Psyr_0660 0.60 +1.2 748,926 - Psyr_0660 0.60 -1.2 748,993 + Psyr_0660 0.69 -2.6 748,993 + Psyr_0660 0.69 -0.2 748,993 + Psyr_0660 0.69 -0.3 748,993 + Psyr_0660 0.69 -1.0 748,993 + Psyr_0660 0.69 +0.1 748,993 + Psyr_0660 0.69 +0.3 748,993 + Psyr_0660 0.69 +0.2 748,993 + Psyr_0660 0.69 -0.0 748,993 + Psyr_0660 0.69 -0.4 748,993 + Psyr_0660 0.69 +0.8 748,993 + Psyr_0660 0.69 +0.2 748,993 + Psyr_0660 0.69 -1.9 748,993 + Psyr_0660 0.69 +0.4 748,993 + Psyr_0660 0.69 -0.5 748,993 + Psyr_0660 0.69 +0.0 748,993 + Psyr_0660 0.69 -0.1 748,993 + Psyr_0660 0.69 -0.8 748,993 + Psyr_0660 0.69 +0.2 748,993 + Psyr_0660 0.69 +0.1 748,993 + Psyr_0660 0.69 -0.8 748,993 + Psyr_0660 0.69 +0.1 748,993 + Psyr_0660 0.69 +0.9 748,993 + Psyr_0660 0.69 -0.5 748,994 - Psyr_0660 0.69 +0.5 748,994 - Psyr_0660 0.69 +0.2 748,994 - Psyr_0660 0.69 +0.5 748,994 - Psyr_0660 0.69 +0.4 748,994 - Psyr_0660 0.69 -0.1 748,994 - Psyr_0660 0.69 +0.1 748,994 - Psyr_0660 0.69 -0.8 748,994 - Psyr_0660 0.69 -1.7 748,994 - Psyr_0660 0.69 +4.2 748,994 - +3.1 748,994 - Psyr_0660 0.69 -2.5 748,994 - Psyr_0660 0.69 +0.1 748,994 - Psyr_0660 0.69 -0.3 748,994 - Psyr_0660 0.69 -0.1 748,994 - Psyr_0660 0.69 +0.5 748,994 - Psyr_0660 0.69 -0.6 748,994 - Psyr_0660 0.69 +2.4 748,994 - Psyr_0660 0.69 +1.1 748,994 - Psyr_0660 0.69 +0.9 748,994 - Psyr_0660 0.69 +0.9 748,994 - Psyr_0660 0.69 +1.6 748,994 - Psyr_0660 0.69 +1.1 748,994 - Psyr_0660 0.69 -1.1 748,994 - Psyr_0660 0.69 -0.1 748,994 - Psyr_0660 0.69 +0.1 748,997 + Psyr_0660 0.70 -0.7 749,257 + +0.5 749,367 - -0.3 749,444 + +0.8 749,444 + -0.1 749,444 + -0.7 749,445 - +0.3 749,445 - -0.8 749,445 - -1.0 749,445 - +1.3 749,472 - Psyr_0661 0.11 +1.7 749,711 + Psyr_0661 0.36 +0.4 749,711 + Psyr_0661 0.36 +1.3 749,712 - Psyr_0661 0.36 -0.2 749,712 - Psyr_0661 0.36 +1.3 749,712 - Psyr_0661 0.36 +0.7 750,077 + Psyr_0661 0.75 +0.3 750,095 + Psyr_0661 0.77 -2.4 750,095 + Psyr_0661 0.77 +0.3 750,118 + Psyr_0661 0.79 -0.3 750,118 + Psyr_0661 0.79 -1.5 750,118 + Psyr_0661 0.79 +0.6 750,118 + Psyr_0661 0.79 -0.3 750,119 - Psyr_0661 0.79 +1.4 750,119 - Psyr_0661 0.79 -0.8 750,119 - Psyr_0661 0.79 -0.4 750,119 - Psyr_0661 0.79 -0.3 750,134 + Psyr_0661 0.81 -0.2 750,137 + Psyr_0661 0.81 +0.7 750,137 + Psyr_0661 0.81 +0.4 750,137 + Psyr_0661 0.81 +2.9 750,138 - Psyr_0661 0.81 +1.8 750,138 - Psyr_0661 0.81 +0.6 750,138 - Psyr_0661 0.81 +0.1 750,173 + Psyr_0661 0.85 -1.1 750,173 + Psyr_0661 0.85 +0.7 750,173 + Psyr_0661 0.85 +0.4 750,173 + Psyr_0661 0.85 +0.4 750,173 + Psyr_0661 0.85 +0.6 750,173 + Psyr_0661 0.85 +2.6 750,174 - Psyr_0661 0.85 -0.5
Or see this region's nucleotide sequence