Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11530

Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11515 and BWI76_RS11520 are separated by 42 nucleotidesBWI76_RS11520 and BWI76_RS11525 are separated by 60 nucleotidesBWI76_RS11525 and BWI76_RS11530 are separated by 100 nucleotidesBWI76_RS11530 and BWI76_RS11535 are separated by 324 nucleotides BWI76_RS11515: BWI76_RS11515 - peptide-methionine (R)-S-oxide reductase, at 2,423,817 to 2,424,230 _RS11515 BWI76_RS11520: BWI76_RS11520 - hypothetical protein, at 2,424,273 to 2,424,548 _RS11520 BWI76_RS11525: BWI76_RS11525 - HNH endonuclease, at 2,424,609 to 2,424,953 _RS11525 BWI76_RS11530: BWI76_RS11530 - chitinase, at 2,425,054 to 2,426,307 _RS11530 BWI76_RS11535: BWI76_RS11535 - putative oxidoreductase, Zn-dependent and NAD(P)-binding protein, at 2,426,632 to 2,427,708 _RS11535 Position (kb) 2425 2426 2427Strain fitness (log2 ratio) -1 0 1at 2424.443 kb on + strand, within BWI76_RS11520at 2424.573 kb on + strandat 2424.759 kb on + strand, within BWI76_RS11525at 2424.772 kb on - strand, within BWI76_RS11525at 2425.060 kb on - strandat 2425.203 kb on + strand, within BWI76_RS11530at 2425.553 kb on + strand, within BWI76_RS11530at 2425.558 kb on + strand, within BWI76_RS11530at 2425.566 kb on - strand, within BWI76_RS11530at 2425.605 kb on + strand, within BWI76_RS11530at 2425.646 kb on - strand, within BWI76_RS11530at 2425.753 kb on + strand, within BWI76_RS11530at 2425.924 kb on + strand, within BWI76_RS11530at 2426.128 kb on - strand, within BWI76_RS11530at 2426.467 kb on + strandat 2427.190 kb on - strand, within BWI76_RS11535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads
remove
2,424,443 + BWI76_RS11520 0.62 -0.0
2,424,573 + +0.9
2,424,759 + BWI76_RS11525 0.43 +0.1
2,424,772 - BWI76_RS11525 0.47 -0.4
2,425,060 - -0.6
2,425,203 + BWI76_RS11530 0.12 +0.3
2,425,553 + BWI76_RS11530 0.40 +0.7
2,425,558 + BWI76_RS11530 0.40 +0.4
2,425,566 - BWI76_RS11530 0.41 -0.3
2,425,605 + BWI76_RS11530 0.44 +1.5
2,425,646 - BWI76_RS11530 0.47 +0.3
2,425,753 + BWI76_RS11530 0.56 +0.1
2,425,924 + BWI76_RS11530 0.69 +0.4
2,426,128 - BWI76_RS11530 0.86 +1.1
2,426,467 + -0.5
2,427,190 - BWI76_RS11535 0.52 -0.2

Or see this region's nucleotide sequence