Experiment: Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0143 and BT0144 are separated by 204 nucleotides BT0144 and BT0145 are separated by 160 nucleotides BT0145 and BT0146 are separated by 60 nucleotides
BT0143: BT0143 - putative transmembrane protein (NCBI ptt file), at 146,387 to 147,763
BT0143
BT0144: BT0144 - putative beta-xylosidase (NCBI ptt file), at 147,968 to 148,198
BT0144
BT0145: BT0145 - putative beta-xylosidase (NCBI ptt file), at 148,359 to 149,618
BT0145
BT0146: BT0146 - unsaturated glucuronyl hydrolase (NCBI ptt file), at 149,679 to 150,899
BT0146
Position (kb) 148
149
150 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 147.373 kb on + strand, within BT0143 at 147.373 kb on + strand, within BT0143 at 147.431 kb on + strand, within BT0143 at 147.431 kb on + strand, within BT0143 at 147.435 kb on + strand, within BT0143 at 147.527 kb on - strand, within BT0143 at 147.564 kb on + strand, within BT0143 at 147.564 kb on + strand, within BT0143 at 147.569 kb on - strand, within BT0143 at 147.730 kb on - strand at 147.730 kb on - strand at 147.749 kb on + strand at 147.801 kb on - strand at 147.801 kb on - strand at 147.805 kb on - strand at 147.824 kb on + strand at 147.826 kb on + strand at 147.826 kb on + strand at 147.827 kb on - strand at 147.827 kb on - strand at 147.846 kb on - strand at 147.937 kb on + strand at 147.965 kb on - strand at 147.968 kb on - strand at 148.069 kb on + strand, within BT0144 at 148.074 kb on - strand, within BT0144 at 148.117 kb on - strand, within BT0144 at 148.225 kb on - strand at 148.286 kb on - strand at 148.356 kb on + strand at 148.357 kb on - strand at 148.475 kb on - strand at 148.483 kb on - strand at 148.601 kb on + strand, within BT0145 at 148.638 kb on + strand, within BT0145 at 148.790 kb on + strand, within BT0145 at 148.791 kb on - strand, within BT0145 at 148.839 kb on + strand, within BT0145 at 148.851 kb on - strand, within BT0145 at 148.980 kb on - strand, within BT0145 at 149.055 kb on - strand, within BT0145 at 149.084 kb on + strand, within BT0145 at 149.094 kb on + strand, within BT0145 at 149.255 kb on + strand, within BT0145 at 149.260 kb on - strand, within BT0145 at 149.419 kb on - strand, within BT0145 at 149.464 kb on - strand, within BT0145 at 149.486 kb on + strand, within BT0145 at 149.487 kb on - strand, within BT0145 at 149.593 kb on + strand at 149.707 kb on + strand at 149.707 kb on + strand at 149.710 kb on + strand at 149.762 kb on + strand at 149.762 kb on + strand at 149.830 kb on + strand, within BT0146 at 149.836 kb on - strand, within BT0146 at 149.837 kb on + strand, within BT0146 at 149.838 kb on - strand, within BT0146 at 149.838 kb on - strand, within BT0146 at 149.969 kb on + strand, within BT0146 at 150.031 kb on - strand, within BT0146 at 150.150 kb on - strand, within BT0146 at 150.216 kb on - strand, within BT0146 at 150.283 kb on - strand, within BT0146 at 150.283 kb on - strand, within BT0146 at 150.286 kb on + strand, within BT0146 at 150.287 kb on - strand, within BT0146 at 150.287 kb on - strand, within BT0146 at 150.288 kb on + strand, within BT0146 at 150.288 kb on + strand, within BT0146 at 150.320 kb on + strand, within BT0146 at 150.321 kb on - strand, within BT0146 at 150.347 kb on + strand, within BT0146 at 150.348 kb on - strand, within BT0146 at 150.348 kb on - strand, within BT0146 at 150.362 kb on - strand, within BT0146 at 150.367 kb on + strand, within BT0146 at 150.368 kb on - strand, within BT0146 at 150.369 kb on + strand, within BT0146 at 150.370 kb on - strand, within BT0146 at 150.370 kb on - strand, within BT0146 at 150.372 kb on - strand, within BT0146 at 150.377 kb on + strand, within BT0146 at 150.378 kb on - strand, within BT0146 at 150.381 kb on - strand, within BT0146 at 150.462 kb on + strand, within BT0146 at 150.480 kb on + strand, within BT0146 at 150.537 kb on + strand, within BT0146
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.0125 mM remove 147,373 + BT0143 0.72 -1.2 147,373 + BT0143 0.72 -1.4 147,431 + BT0143 0.76 -0.4 147,431 + BT0143 0.76 -1.2 147,435 + BT0143 0.76 -1.4 147,527 - BT0143 0.83 -1.0 147,564 + BT0143 0.85 -1.3 147,564 + BT0143 0.85 -0.4 147,569 - BT0143 0.86 +1.0 147,730 - -0.5 147,730 - -2.1 147,749 + -1.6 147,801 - -1.1 147,801 - +0.0 147,805 - -1.5 147,824 + -1.5 147,826 + +0.0 147,826 + +0.0 147,827 - -1.0 147,827 - -1.3 147,846 - +0.0 147,937 + +1.5 147,965 - -1.3 147,968 - -1.0 148,069 + BT0144 0.44 +0.0 148,074 - BT0144 0.46 +0.0 148,117 - BT0144 0.65 -2.3 148,225 - -2.0 148,286 - +2.2 148,356 + +0.0 148,357 - +0.0 148,475 - -0.8 148,483 - +0.0 148,601 + BT0145 0.19 -1.0 148,638 + BT0145 0.22 -2.0 148,790 + BT0145 0.34 +0.0 148,791 - BT0145 0.34 +0.0 148,839 + BT0145 0.38 -1.3 148,851 - BT0145 0.39 +0.0 148,980 - BT0145 0.49 -2.0 149,055 - BT0145 0.55 -1.5 149,084 + BT0145 0.58 -2.0 149,094 + BT0145 0.58 +1.0 149,255 + BT0145 0.71 -0.4 149,260 - BT0145 0.72 -4.0 149,419 - BT0145 0.84 -2.1 149,464 - BT0145 0.88 +1.6 149,486 + BT0145 0.89 -2.5 149,487 - BT0145 0.90 +0.0 149,593 + +0.0 149,707 + +2.6 149,707 + -0.5 149,710 + -1.0 149,762 + -3.0 149,762 + +1.0 149,830 + BT0146 0.12 -1.0 149,836 - BT0146 0.13 -1.5 149,837 + BT0146 0.13 +0.5 149,838 - BT0146 0.13 -1.8 149,838 - BT0146 0.13 +0.0 149,969 + BT0146 0.24 +0.0 150,031 - BT0146 0.29 -1.2 150,150 - BT0146 0.39 +0.0 150,216 - BT0146 0.44 -0.5 150,283 - BT0146 0.49 -1.5 150,283 - BT0146 0.49 -1.5 150,286 + BT0146 0.50 -2.4 150,287 - BT0146 0.50 -0.5 150,287 - BT0146 0.50 +0.0 150,288 + BT0146 0.50 -1.0 150,288 + BT0146 0.50 -0.4 150,320 + BT0146 0.52 -1.4 150,321 - BT0146 0.53 -1.6 150,347 + BT0146 0.55 -2.0 150,348 - BT0146 0.55 +1.0 150,348 - BT0146 0.55 +1.0 150,362 - BT0146 0.56 -1.4 150,367 + BT0146 0.56 -2.0 150,368 - BT0146 0.56 -2.0 150,369 + BT0146 0.57 -1.4 150,370 - BT0146 0.57 +0.0 150,370 - BT0146 0.57 -1.5 150,372 - BT0146 0.57 -0.8 150,377 + BT0146 0.57 -1.5 150,378 - BT0146 0.57 -2.5 150,381 - BT0146 0.57 +0.0 150,462 + BT0146 0.64 -2.1 150,480 + BT0146 0.66 -1.9 150,537 + BT0146 0.70 -1.3
Or see this region's nucleotide sequence