Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0089

Experiment: MoLS4 with L-Tryptophan (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVUA0088 and DVUA0089 are separated by 492 nucleotidesDVUA0089 and DVUA0090 are separated by 579 nucleotides DVUA0088: DVUA0088 - conserved hypothetical protein (TIGR), at 119,777 to 120,796 DVUA0088 DVUA0089: DVUA0089 - hypothetical protein (TIGR), at 121,289 to 121,906 DVUA0089 DVUA0090: DVUA0090 - membrane protein, putative (TIGR), at 122,486 to 123,358 DVUA0090 Position (kb) 121 122Strain fitness (log2 ratio) -2 -1 0 1at 120.398 kb on + strand, within DVUA0088at 120.408 kb on - strand, within DVUA0088at 120.419 kb on + strand, within DVUA0088at 120.425 kb on - strand, within DVUA0088at 120.461 kb on - strand, within DVUA0088at 120.539 kb on + strand, within DVUA0088at 120.539 kb on + strand, within DVUA0088at 120.613 kb on + strand, within DVUA0088at 120.673 kb on + strand, within DVUA0088at 120.708 kb on + strandat 120.765 kb on + strandat 120.920 kb on + strandat 120.928 kb on - strandat 120.928 kb on - strandat 120.941 kb on + strandat 120.953 kb on + strandat 120.998 kb on - strandat 121.031 kb on - strandat 121.161 kb on + strandat 121.161 kb on + strandat 121.294 kb on - strandat 121.366 kb on - strand, within DVUA0089at 122.242 kb on - strandat 122.245 kb on - strandat 122.297 kb on + strandat 122.297 kb on + strandat 122.316 kb on + strandat 122.331 kb on + strandat 122.331 kb on + strandat 122.341 kb on + strandat 122.341 kb on + strandat 122.341 kb on + strandat 122.349 kb on - strandat 122.409 kb on + strandat 122.477 kb on + strandat 122.486 kb on - strandat 122.498 kb on + strandat 122.506 kb on - strandat 122.506 kb on - strandat 122.556 kb on + strandat 122.589 kb on - strand, within DVUA0090at 122.615 kb on - strand, within DVUA0090at 122.818 kb on - strand, within DVUA0090at 122.878 kb on - strand, within DVUA0090at 122.905 kb on + strand, within DVUA0090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
remove
120,398 + DVUA0088 0.61 -1.0
120,408 - DVUA0088 0.62 -0.7
120,419 + DVUA0088 0.63 -0.2
120,425 - DVUA0088 0.64 +1.0
120,461 - DVUA0088 0.67 +0.4
120,539 + DVUA0088 0.75 -0.1
120,539 + DVUA0088 0.75 +0.8
120,613 + DVUA0088 0.82 -0.2
120,673 + DVUA0088 0.88 -1.5
120,708 + +0.1
120,765 + -0.7
120,920 + -0.6
120,928 - -0.4
120,928 - -0.4
120,941 + -0.2
120,953 + -0.1
120,998 - -0.1
121,031 - -0.7
121,161 + -0.4
121,161 + -0.1
121,294 - -0.3
121,366 - DVUA0089 0.12 -1.8
122,242 - -0.8
122,245 - -0.1
122,297 + -0.0
122,297 + +0.6
122,316 + -0.2
122,331 + -0.2
122,331 + -0.3
122,341 + +0.1
122,341 + +0.2
122,341 + -0.7
122,349 - +0.1
122,409 + -1.3
122,477 + -0.6
122,486 - +0.1
122,498 + -1.5
122,506 - -0.6
122,506 - +0.1
122,556 + -0.5
122,589 - DVUA0090 0.12 +0.0
122,615 - DVUA0090 0.15 +0.2
122,818 - DVUA0090 0.38 -0.5
122,878 - DVUA0090 0.45 -0.7
122,905 + DVUA0090 0.48 +0.5

Or see this region's nucleotide sequence