Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1456

Experiment: MoLS4 with L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnpB and DVU1455 are separated by 12 nucleotidesDVU1455 and DVU1456 are separated by 40 nucleotidesDVU1456 and tRNA-Met are separated by 119 nucleotidestRNA-Met and trxB are separated by 48 nucleotides DvrnpB1: rnpB - RnpB RNA: catalytic subunit of RNase P (VIMSS-AUTO), at 1,533,841 to 1,534,196 rnpB DVU1455: DVU1455 - conserved hypothetical protein (TIGR), at 1,534,209 to 1,534,952 DVU1455 DVU1456: DVU1456 - NIF3 family protein (TIGR), at 1,534,993 to 1,536,003 DVU1456 DVU_tRNA-Met-2: tRNA-Met - tRNA with anticodon CAT for Met (VIMSS-AUTO), at 1,536,123 to 1,536,198 tRNA-Met DVU1457: trxB - thioredoxin reductase, putative (TIGR), at 1,536,247 to 1,537,176 trxB Position (kb) 1534 1535 1536 1537Strain fitness (log2 ratio) -2 -1 0 1 2at 1534.231 kb on + strandat 1534.383 kb on + strand, within DVU1455at 1534.549 kb on - strand, within DVU1455at 1534.580 kb on - strand, within DVU1455at 1534.835 kb on + strand, within DVU1455at 1534.835 kb on + strand, within DVU1455at 1534.843 kb on - strand, within DVU1455at 1534.874 kb on - strand, within DVU1455at 1534.908 kb on + strandat 1534.934 kb on + strandat 1535.032 kb on - strandat 1535.084 kb on - strandat 1535.357 kb on + strand, within DVU1456at 1535.482 kb on - strand, within DVU1456at 1535.539 kb on + strand, within DVU1456at 1535.557 kb on - strand, within DVU1456at 1535.575 kb on + strand, within DVU1456at 1535.575 kb on - strand, within DVU1456at 1535.582 kb on - strand, within DVU1456at 1535.745 kb on - strand, within DVU1456at 1535.764 kb on - strand, within DVU1456at 1535.776 kb on - strand, within DVU1456at 1536.073 kb on - strandat 1536.275 kb on - strandat 1536.294 kb on - strandat 1536.296 kb on + strandat 1536.302 kb on + strandat 1536.315 kb on - strandat 1536.334 kb on - strandat 1536.404 kb on - strand, within trxBat 1536.415 kb on - strand, within trxBat 1536.558 kb on + strand, within trxBat 1536.602 kb on - strand, within trxBat 1536.634 kb on + strand, within trxBat 1536.691 kb on + strand, within trxBat 1536.699 kb on + strand, within trxBat 1536.699 kb on - strand, within trxBat 1536.749 kb on - strand, within trxBat 1536.776 kb on + strand, within trxBat 1536.804 kb on - strand, within trxBat 1536.805 kb on + strand, within trxBat 1536.891 kb on + strand, within trxBat 1536.965 kb on - strand, within trxB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
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1,534,231 + -1.1
1,534,383 + DVU1455 0.23 -0.9
1,534,549 - DVU1455 0.46 +1.5
1,534,580 - DVU1455 0.50 +1.1
1,534,835 + DVU1455 0.84 +0.9
1,534,835 + DVU1455 0.84 +1.1
1,534,843 - DVU1455 0.85 +0.3
1,534,874 - DVU1455 0.89 -1.6
1,534,908 + -0.5
1,534,934 + +0.7
1,535,032 - -1.5
1,535,084 - +0.7
1,535,357 + DVU1456 0.36 -1.3
1,535,482 - DVU1456 0.48 +1.1
1,535,539 + DVU1456 0.54 -0.8
1,535,557 - DVU1456 0.56 -1.6
1,535,575 + DVU1456 0.58 -1.3
1,535,575 - DVU1456 0.58 -0.1
1,535,582 - DVU1456 0.58 -1.8
1,535,745 - DVU1456 0.74 +2.1
1,535,764 - DVU1456 0.76 -0.0
1,535,776 - DVU1456 0.77 -0.7
1,536,073 - +0.2
1,536,275 - -0.1
1,536,294 - -1.3
1,536,296 + +0.3
1,536,302 + -0.9
1,536,315 - -0.4
1,536,334 - -0.9
1,536,404 - trxB DVU1457 0.17 -0.2
1,536,415 - trxB DVU1457 0.18 -0.2
1,536,558 + trxB DVU1457 0.33 -1.0
1,536,602 - trxB DVU1457 0.38 -0.4
1,536,634 + trxB DVU1457 0.42 -1.7
1,536,691 + trxB DVU1457 0.48 -0.2
1,536,699 + trxB DVU1457 0.49 -0.6
1,536,699 - trxB DVU1457 0.49 -0.4
1,536,749 - trxB DVU1457 0.54 -0.4
1,536,776 + trxB DVU1457 0.57 -0.7
1,536,804 - trxB DVU1457 0.60 -1.5
1,536,805 + trxB DVU1457 0.60 -0.4
1,536,891 + trxB DVU1457 0.69 -0.4
1,536,965 - trxB DVU1457 0.77 -0.0

Or see this region's nucleotide sequence