Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1276

Experiment: MoLS4 with L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1274 and DVU1275 are separated by 55 nucleotidesDVU1275 and DVU1276 overlap by 4 nucleotidesDVU1276 and DVU1277 are separated by 284 nucleotidesDVU1277 and tRNA-SeC(p) are separated by 156 nucleotides DVU1274: DVU1274 - hypothetical protein (TIGR), at 1,365,953 to 1,366,396 DVU1274 DVU1275: DVU1275 - hypothetical protein (TIGR), at 1,366,452 to 1,367,012 DVU1275 DVU1276: DVU1276 - hypothetical protein (TIGR), at 1,367,009 to 1,368,928 DVU1276 DVU1277: DVU1277 - hypothetical protein (TIGR), at 1,369,213 to 1,369,350 DVU1277 DVU_tRNA-SeC(p)-1: tRNA-SeC(p) - tRNA with anticodon TCA for SeC(p) (VIMSS-AUTO), at 1,369,507 to 1,369,596 tRNA-SeC(p) Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1366.017 kb on + strand, within DVU1274at 1366.081 kb on + strand, within DVU1274at 1366.169 kb on - strand, within DVU1274at 1366.180 kb on + strand, within DVU1274at 1366.246 kb on - strand, within DVU1274at 1366.246 kb on - strand, within DVU1274at 1366.342 kb on - strand, within DVU1274at 1366.344 kb on + strand, within DVU1274at 1366.345 kb on + strand, within DVU1274at 1366.412 kb on + strandat 1366.449 kb on + strandat 1366.459 kb on + strandat 1366.464 kb on + strandat 1366.528 kb on + strand, within DVU1275at 1366.534 kb on + strand, within DVU1275at 1366.544 kb on + strand, within DVU1275at 1366.560 kb on + strand, within DVU1275at 1366.604 kb on + strand, within DVU1275at 1366.622 kb on - strand, within DVU1275at 1366.679 kb on + strand, within DVU1275at 1366.731 kb on - strand, within DVU1275at 1366.738 kb on - strand, within DVU1275at 1366.760 kb on + strand, within DVU1275at 1366.826 kb on + strand, within DVU1275at 1366.834 kb on - strand, within DVU1275at 1367.015 kb on - strandat 1367.025 kb on - strandat 1367.085 kb on + strandat 1367.152 kb on + strandat 1367.160 kb on - strandat 1367.198 kb on + strandat 1367.206 kb on - strand, within DVU1276at 1367.206 kb on - strand, within DVU1276at 1367.336 kb on + strand, within DVU1276at 1367.364 kb on + strand, within DVU1276at 1367.372 kb on - strand, within DVU1276at 1367.376 kb on + strand, within DVU1276at 1367.452 kb on + strand, within DVU1276at 1367.537 kb on + strand, within DVU1276at 1367.537 kb on + strand, within DVU1276at 1367.537 kb on + strand, within DVU1276at 1367.545 kb on - strand, within DVU1276at 1367.545 kb on - strand, within DVU1276at 1367.597 kb on + strand, within DVU1276at 1367.609 kb on + strand, within DVU1276at 1367.634 kb on + strand, within DVU1276at 1367.666 kb on - strand, within DVU1276at 1367.698 kb on - strand, within DVU1276at 1367.749 kb on + strand, within DVU1276at 1367.749 kb on + strand, within DVU1276at 1367.757 kb on - strand, within DVU1276at 1367.757 kb on - strand, within DVU1276at 1367.849 kb on - strand, within DVU1276at 1367.874 kb on - strand, within DVU1276at 1367.967 kb on + strand, within DVU1276at 1367.975 kb on - strand, within DVU1276at 1367.975 kb on - strand, within DVU1276at 1368.029 kb on + strand, within DVU1276at 1368.110 kb on + strand, within DVU1276at 1368.136 kb on + strand, within DVU1276at 1368.226 kb on - strand, within DVU1276at 1368.236 kb on - strand, within DVU1276at 1368.280 kb on - strand, within DVU1276at 1368.452 kb on - strand, within DVU1276at 1368.469 kb on - strand, within DVU1276at 1368.505 kb on + strand, within DVU1276at 1368.633 kb on + strand, within DVU1276at 1368.648 kb on - strand, within DVU1276at 1368.648 kb on - strand, within DVU1276at 1368.648 kb on - strand, within DVU1276at 1368.648 kb on - strand, within DVU1276at 1368.703 kb on - strand, within DVU1276at 1368.708 kb on - strand, within DVU1276at 1368.897 kb on + strandat 1369.039 kb on - strandat 1369.148 kb on - strandat 1369.263 kb on - strand, within DVU1277at 1369.337 kb on + strandat 1369.443 kb on + strandat 1369.613 kb on - strandat 1369.659 kb on - strandat 1369.677 kb on + strandat 1369.696 kb on + strandat 1369.704 kb on - strandat 1369.830 kb on - strandat 1369.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
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1,366,017 + DVU1274 0.14 +0.9
1,366,081 + DVU1274 0.29 +3.0
1,366,169 - DVU1274 0.49 +1.1
1,366,180 + DVU1274 0.51 +0.1
1,366,246 - DVU1274 0.66 +0.5
1,366,246 - DVU1274 0.66 +1.1
1,366,342 - DVU1274 0.88 +0.5
1,366,344 + DVU1274 0.88 +0.9
1,366,345 + DVU1274 0.88 +0.7
1,366,412 + -0.9
1,366,449 + +0.7
1,366,459 + -0.1
1,366,464 + +0.4
1,366,528 + DVU1275 0.14 +0.9
1,366,534 + DVU1275 0.15 +1.7
1,366,544 + DVU1275 0.16 +1.0
1,366,560 + DVU1275 0.19 -0.5
1,366,604 + DVU1275 0.27 +0.6
1,366,622 - DVU1275 0.30 +0.5
1,366,679 + DVU1275 0.40 -0.5
1,366,731 - DVU1275 0.50 +1.1
1,366,738 - DVU1275 0.51 +1.3
1,366,760 + DVU1275 0.55 +0.6
1,366,826 + DVU1275 0.67 +0.7
1,366,834 - DVU1275 0.68 +1.5
1,367,015 - -0.8
1,367,025 - +0.5
1,367,085 + +1.0
1,367,152 + +0.1
1,367,160 - +0.9
1,367,198 + +0.7
1,367,206 - DVU1276 0.10 +0.2
1,367,206 - DVU1276 0.10 +0.2
1,367,336 + DVU1276 0.17 +0.0
1,367,364 + DVU1276 0.18 -0.2
1,367,372 - DVU1276 0.19 +0.3
1,367,376 + DVU1276 0.19 +1.0
1,367,452 + DVU1276 0.23 +0.6
1,367,537 + DVU1276 0.28 +1.0
1,367,537 + DVU1276 0.28 +0.5
1,367,537 + DVU1276 0.28 +0.5
1,367,545 - DVU1276 0.28 +1.2
1,367,545 - DVU1276 0.28 -0.1
1,367,597 + DVU1276 0.31 -0.5
1,367,609 + DVU1276 0.31 -0.6
1,367,634 + DVU1276 0.33 +0.8
1,367,666 - DVU1276 0.34 +0.6
1,367,698 - DVU1276 0.36 +1.6
1,367,749 + DVU1276 0.39 +0.6
1,367,749 + DVU1276 0.39 +1.2
1,367,757 - DVU1276 0.39 -0.4
1,367,757 - DVU1276 0.39 +0.8
1,367,849 - DVU1276 0.44 +0.5
1,367,874 - DVU1276 0.45 +0.5
1,367,967 + DVU1276 0.50 -0.4
1,367,975 - DVU1276 0.50 +1.3
1,367,975 - DVU1276 0.50 -0.3
1,368,029 + DVU1276 0.53 +0.9
1,368,110 + DVU1276 0.57 +0.8
1,368,136 + DVU1276 0.59 +0.6
1,368,226 - DVU1276 0.63 -0.7
1,368,236 - DVU1276 0.64 +1.1
1,368,280 - DVU1276 0.66 +0.5
1,368,452 - DVU1276 0.75 +0.2
1,368,469 - DVU1276 0.76 +1.0
1,368,505 + DVU1276 0.78 -0.3
1,368,633 + DVU1276 0.85 +1.0
1,368,648 - DVU1276 0.85 +0.9
1,368,648 - DVU1276 0.85 +0.9
1,368,648 - DVU1276 0.85 +1.4
1,368,648 - DVU1276 0.85 +0.1
1,368,703 - DVU1276 0.88 +0.0
1,368,708 - DVU1276 0.88 +0.5
1,368,897 + +1.5
1,369,039 - +0.7
1,369,148 - +0.7
1,369,263 - DVU1277 0.36 -2.0
1,369,337 + +0.7
1,369,443 + -0.3
1,369,613 - -0.1
1,369,659 - -0.4
1,369,677 + +0.3
1,369,696 + -0.6
1,369,704 - +1.0
1,369,830 - -0.6
1,369,862 + +0.8

Or see this region's nucleotide sequence