Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23750 and BWI76_RS23755 are separated by 52 nucleotides BWI76_RS23755 and BWI76_RS23760 are separated by 159 nucleotides BWI76_RS23760 and BWI76_RS23765 are separated by 80 nucleotides BWI76_RS23765 and BWI76_RS23770 are separated by 89 nucleotides
BWI76_RS23750: BWI76_RS23750 - arsenical efflux pump membrane protein ArsB, at 4,959,191 to 4,960,483
_RS23750
BWI76_RS23755: BWI76_RS23755 - transcriptional regulator, at 4,960,536 to 4,960,886
_RS23755
BWI76_RS23760: BWI76_RS23760 - tRNA-Gly, at 4,961,046 to 4,961,119
_RS23760
BWI76_RS23765: BWI76_RS23765 - peptidase M23, at 4,961,200 to 4,961,925
_RS23765
BWI76_RS23770: BWI76_RS23770 - LysR family transcriptional regulator, at 4,962,015 to 4,962,911
_RS23770
Position (kb)
4961
4962 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4960.078 kb on - strand at 4960.078 kb on - strand, within BWI76_RS23750 at 4960.179 kb on - strand, within BWI76_RS23750 at 4960.189 kb on - strand, within BWI76_RS23750 at 4960.243 kb on + strand, within BWI76_RS23750 at 4960.243 kb on + strand, within BWI76_RS23750 at 4960.331 kb on + strand, within BWI76_RS23750 at 4960.382 kb on - strand at 4960.415 kb on + strand at 4960.415 kb on + strand at 4960.559 kb on + strand at 4960.598 kb on + strand, within BWI76_RS23755 at 4960.687 kb on + strand, within BWI76_RS23755 at 4960.695 kb on - strand, within BWI76_RS23755 at 4960.695 kb on - strand, within BWI76_RS23755 at 4960.695 kb on - strand, within BWI76_RS23755 at 4960.695 kb on - strand, within BWI76_RS23755 at 4960.766 kb on + strand, within BWI76_RS23755 at 4960.766 kb on + strand, within BWI76_RS23755 at 4960.874 kb on - strand at 4960.927 kb on - strand at 4961.000 kb on + strand at 4961.061 kb on - strand, within BWI76_RS23760 at 4961.138 kb on + strand at 4961.372 kb on - strand, within BWI76_RS23765 at 4961.383 kb on + strand, within BWI76_RS23765 at 4961.598 kb on + strand, within BWI76_RS23765 at 4961.710 kb on - strand, within BWI76_RS23765 at 4961.782 kb on - strand, within BWI76_RS23765 at 4961.822 kb on - strand, within BWI76_RS23765 at 4961.929 kb on - strand at 4961.931 kb on + strand at 4961.949 kb on + strand at 4961.983 kb on - strand at 4961.995 kb on - strand at 4962.020 kb on - strand at 4962.071 kb on + strand at 4962.076 kb on + strand at 4962.076 kb on + strand at 4962.076 kb on + strand at 4962.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand remove 4,960,078 - -0.2 4,960,078 - BWI76_RS23750 0.69 +0.2 4,960,179 - BWI76_RS23750 0.76 -0.2 4,960,189 - BWI76_RS23750 0.77 +1.0 4,960,243 + BWI76_RS23750 0.81 -0.1 4,960,243 + BWI76_RS23750 0.81 +0.0 4,960,331 + BWI76_RS23750 0.88 -0.5 4,960,382 - +0.1 4,960,415 + -0.0 4,960,415 + +0.5 4,960,559 + -0.8 4,960,598 + BWI76_RS23755 0.18 -0.0 4,960,687 + BWI76_RS23755 0.43 +0.9 4,960,695 - BWI76_RS23755 0.45 +0.4 4,960,695 - BWI76_RS23755 0.45 -0.1 4,960,695 - BWI76_RS23755 0.45 -0.5 4,960,695 - BWI76_RS23755 0.45 -0.1 4,960,766 + BWI76_RS23755 0.66 +0.4 4,960,766 + BWI76_RS23755 0.66 -0.4 4,960,874 - -1.0 4,960,927 - -0.4 4,961,000 + +0.1 4,961,061 - BWI76_RS23760 0.20 -1.5 4,961,138 + +0.9 4,961,372 - BWI76_RS23765 0.24 +1.1 4,961,383 + BWI76_RS23765 0.25 +0.4 4,961,598 + BWI76_RS23765 0.55 +1.0 4,961,710 - BWI76_RS23765 0.70 -0.2 4,961,782 - BWI76_RS23765 0.80 -1.0 4,961,822 - BWI76_RS23765 0.86 +0.1 4,961,929 - -0.4 4,961,931 + +0.4 4,961,949 + -0.1 4,961,983 - -0.3 4,961,995 - +2.9 4,962,020 - -1.8 4,962,071 + -2.0 4,962,076 + -0.1 4,962,076 + +0.3 4,962,076 + +0.7 4,962,079 - +0.1
Or see this region's nucleotide sequence