Experiment: Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT1352 and BT1353 are separated by 13 nucleotides BT1353 and BT1354 overlap by 1 nucleotides
BT1352: BT1352 - putative glycosyltransferase HI1698 (NCBI ptt file), at 1,676,856 to 1,678,025
BT1352
BT1353: BT1353 - glycosyltransferase (NCBI ptt file), at 1,678,039 to 1,679,076
BT1353
BT1354: BT1354 - putative flippase (NCBI ptt file), at 1,679,076 to 1,680,617
BT1354
Position (kb) 1678
1679
1680 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1677.191 kb on + strand, within BT1352 at 1677.279 kb on + strand, within BT1352 at 1677.540 kb on + strand, within BT1352 at 1677.577 kb on + strand, within BT1352 at 1677.609 kb on + strand, within BT1352 at 1677.694 kb on + strand, within BT1352 at 1677.725 kb on - strand, within BT1352 at 1677.752 kb on + strand, within BT1352 at 1677.756 kb on + strand, within BT1352 at 1677.831 kb on + strand, within BT1352 at 1677.864 kb on + strand, within BT1352 at 1677.864 kb on + strand, within BT1352 at 1677.884 kb on + strand, within BT1352 at 1677.963 kb on - strand at 1678.025 kb on + strand at 1678.090 kb on + strand at 1678.186 kb on - strand, within BT1353 at 1678.215 kb on + strand, within BT1353 at 1678.669 kb on + strand, within BT1353 at 1678.767 kb on - strand, within BT1353 at 1678.768 kb on + strand, within BT1353 at 1678.888 kb on + strand, within BT1353 at 1678.923 kb on + strand, within BT1353 at 1679.145 kb on + strand at 1679.210 kb on + strand at 1679.213 kb on + strand at 1679.280 kb on + strand, within BT1354 at 1679.283 kb on + strand, within BT1354 at 1679.287 kb on + strand, within BT1354 at 1679.304 kb on + strand, within BT1354 at 1679.386 kb on - strand, within BT1354 at 1679.400 kb on + strand, within BT1354 at 1679.422 kb on + strand, within BT1354 at 1679.491 kb on + strand, within BT1354 at 1679.552 kb on + strand, within BT1354 at 1679.552 kb on + strand, within BT1354 at 1679.570 kb on + strand, within BT1354 at 1679.570 kb on + strand, within BT1354 at 1679.587 kb on + strand, within BT1354 at 1679.736 kb on + strand, within BT1354 at 1679.756 kb on + strand, within BT1354 at 1679.756 kb on + strand, within BT1354 at 1679.775 kb on + strand, within BT1354 at 1679.776 kb on - strand, within BT1354 at 1679.801 kb on + strand, within BT1354 at 1679.812 kb on + strand, within BT1354 at 1679.814 kb on + strand, within BT1354 at 1679.845 kb on + strand, within BT1354 at 1679.847 kb on + strand, within BT1354 at 1679.932 kb on + strand, within BT1354
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM remove 1,677,191 + BT1352 0.29 +0.0 1,677,279 + BT1352 0.36 -1.4 1,677,540 + BT1352 0.58 -4.5 1,677,577 + BT1352 0.62 -2.6 1,677,609 + BT1352 0.64 -2.3 1,677,694 + BT1352 0.72 -2.8 1,677,725 - BT1352 0.74 -1.0 1,677,752 + BT1352 0.77 -2.8 1,677,756 + BT1352 0.77 +0.0 1,677,831 + BT1352 0.83 -1.0 1,677,864 + BT1352 0.86 -1.0 1,677,864 + BT1352 0.86 -2.5 1,677,884 + BT1352 0.88 -3.7 1,677,963 - -2.5 1,678,025 + -3.5 1,678,090 + -2.3 1,678,186 - BT1353 0.14 -2.5 1,678,215 + BT1353 0.17 -2.3 1,678,669 + BT1353 0.61 +0.0 1,678,767 - BT1353 0.70 -3.4 1,678,768 + BT1353 0.70 -2.5 1,678,888 + BT1353 0.82 -2.0 1,678,923 + BT1353 0.85 -1.5 1,679,145 + -1.0 1,679,210 + -1.0 1,679,213 + +0.0 1,679,280 + BT1354 0.13 +0.0 1,679,283 + BT1354 0.13 +0.6 1,679,287 + BT1354 0.14 -2.0 1,679,304 + BT1354 0.15 -3.3 1,679,386 - BT1354 0.20 -2.8 1,679,400 + BT1354 0.21 +1.6 1,679,422 + BT1354 0.22 -2.3 1,679,491 + BT1354 0.27 -0.7 1,679,552 + BT1354 0.31 +0.0 1,679,552 + BT1354 0.31 -1.5 1,679,570 + BT1354 0.32 +0.0 1,679,570 + BT1354 0.32 -2.0 1,679,587 + BT1354 0.33 +0.0 1,679,736 + BT1354 0.43 +0.0 1,679,756 + BT1354 0.44 -1.5 1,679,756 + BT1354 0.44 -2.0 1,679,775 + BT1354 0.45 -2.3 1,679,776 - BT1354 0.45 -2.3 1,679,801 + BT1354 0.47 -1.5 1,679,812 + BT1354 0.48 -1.0 1,679,814 + BT1354 0.48 -2.5 1,679,845 + BT1354 0.50 +0.0 1,679,847 + BT1354 0.50 -1.5 1,679,932 + BT1354 0.56 -1.0
Or see this region's nucleotide sequence