Experiment: Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0775 and BT0776 are separated by 6 nucleotides BT0776 and BT0777 are separated by 14 nucleotides BT0777 and BT0778 are separated by 669 nucleotides
BT0775: BT0775 - ferredoxin-type protein (NCBI ptt file), at 965,896 to 967,461
BT0775
BT0776: BT0776 - conserved hypothetical protein (NCBI ptt file), at 967,468 to 968,403
BT0776
BT0777: BT0777 - hypothetical protein (NCBI ptt file), at 968,418 to 968,933
BT0777
BT0778: BT0778 - conserved hypothetical protein (NCBI ptt file), at 969,603 to 970,490
BT0778
Position (kb) 968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 967.476 kb on + strand at 967.607 kb on - strand, within BT0776 at 967.695 kb on + strand, within BT0776 at 967.717 kb on - strand, within BT0776 at 967.804 kb on - strand, within BT0776 at 968.062 kb on + strand, within BT0776 at 968.347 kb on + strand at 968.348 kb on - strand at 968.349 kb on + strand at 968.371 kb on - strand at 968.550 kb on + strand, within BT0777 at 968.560 kb on + strand, within BT0777 at 968.571 kb on + strand, within BT0777 at 968.572 kb on - strand, within BT0777 at 968.659 kb on - strand, within BT0777 at 968.756 kb on + strand, within BT0777 at 968.893 kb on + strand at 968.967 kb on - strand at 969.010 kb on + strand at 969.168 kb on - strand at 969.229 kb on - strand at 969.338 kb on + strand at 969.339 kb on - strand at 969.339 kb on - strand at 969.354 kb on - strand at 969.354 kb on - strand at 969.358 kb on + strand at 969.367 kb on + strand at 969.375 kb on + strand at 969.400 kb on - strand at 969.432 kb on - strand at 969.432 kb on - strand at 969.465 kb on - strand at 969.533 kb on - strand at 969.533 kb on - strand at 969.595 kb on + strand at 969.821 kb on - strand, within BT0778
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM remove 967,476 + -0.5 967,607 - BT0776 0.15 -1.0 967,695 + BT0776 0.24 -0.3 967,717 - BT0776 0.27 +2.0 967,804 - BT0776 0.36 +1.6 968,062 + BT0776 0.63 -1.6 968,347 + -2.4 968,348 - -0.7 968,349 + -1.6 968,371 - +0.0 968,550 + BT0777 0.26 +0.6 968,560 + BT0777 0.28 -3.6 968,571 + BT0777 0.30 +0.0 968,572 - BT0777 0.30 -2.0 968,659 - BT0777 0.47 -3.3 968,756 + BT0777 0.66 -1.6 968,893 + -1.6 968,967 - -1.0 969,010 + -1.0 969,168 - +2.0 969,229 - -1.6 969,338 + +0.0 969,339 - -1.8 969,339 - -1.0 969,354 - -1.0 969,354 - +0.0 969,358 + +1.6 969,367 + +1.0 969,375 + +0.0 969,400 - -2.1 969,432 - -1.0 969,432 - -2.3 969,465 - +0.4 969,533 - +2.4 969,533 - -1.6 969,595 + -1.8 969,821 - BT0778 0.25 -1.0
Or see this region's nucleotide sequence