Experiment: Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0496 and BT0497 are separated by 17 nucleotides BT0497 and BT0498 are separated by 16 nucleotides BT0498 and BT0499 are separated by 504 nucleotides
BT0496: BT0496 - TonB-dependent receptor (NCBI ptt file), at 613,244 to 615,391
BT0496
BT0497: BT0497 - conserved hypothetical protein (NCBI ptt file), at 615,409 to 616,071
BT0497
BT0498: BT0498 - hypothetical protein (NCBI ptt file), at 616,088 to 616,972
BT0498
BT0499: BT0499 - cation efflux system protein (NCBI ptt file), at 617,477 to 618,376
BT0499
Position (kb) 616
617 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 615.157 kb on - strand, within BT0496 at 615.173 kb on - strand, within BT0496 at 615.173 kb on - strand, within BT0496 at 615.175 kb on - strand, within BT0496 at 615.197 kb on + strand at 615.202 kb on + strand at 615.205 kb on - strand at 615.205 kb on - strand at 615.411 kb on - strand at 615.483 kb on + strand, within BT0497 at 615.486 kb on - strand, within BT0497 at 615.510 kb on - strand, within BT0497 at 615.513 kb on + strand, within BT0497 at 615.513 kb on + strand, within BT0497 at 615.536 kb on + strand, within BT0497 at 615.562 kb on - strand, within BT0497 at 615.753 kb on + strand, within BT0497 at 615.756 kb on - strand, within BT0497 at 615.893 kb on + strand, within BT0497 at 615.903 kb on + strand, within BT0497 at 615.909 kb on - strand, within BT0497 at 616.017 kb on + strand at 616.124 kb on + strand at 616.141 kb on + strand at 616.178 kb on - strand, within BT0498 at 616.319 kb on - strand, within BT0498 at 616.343 kb on - strand, within BT0498 at 616.411 kb on + strand, within BT0498 at 616.412 kb on - strand, within BT0498 at 616.480 kb on + strand, within BT0498 at 616.483 kb on - strand, within BT0498 at 616.486 kb on + strand, within BT0498 at 616.652 kb on - strand, within BT0498 at 617.082 kb on + strand at 617.087 kb on - strand at 617.327 kb on - strand at 617.455 kb on - strand at 617.479 kb on - strand at 617.533 kb on + strand at 617.543 kb on - strand at 617.555 kb on - strand at 617.555 kb on - strand at 617.568 kb on + strand, within BT0499 at 617.663 kb on - strand, within BT0499 at 617.663 kb on - strand, within BT0499 at 617.688 kb on + strand, within BT0499 at 617.708 kb on - strand, within BT0499 at 617.717 kb on + strand, within BT0499 at 617.720 kb on - strand, within BT0499 at 617.906 kb on - strand, within BT0499
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM remove 615,157 - BT0496 0.89 +1.3 615,173 - BT0496 0.90 -2.6 615,173 - BT0496 0.90 -1.0 615,175 - BT0496 0.90 +1.0 615,197 + -1.5 615,202 + -3.5 615,205 - -0.0 615,205 - -1.0 615,411 - -0.0 615,483 + BT0497 0.11 -0.3 615,486 - BT0497 0.12 +1.0 615,510 - BT0497 0.15 -0.0 615,513 + BT0497 0.16 -3.9 615,513 + BT0497 0.16 -0.0 615,536 + BT0497 0.19 -1.7 615,562 - BT0497 0.23 -3.0 615,753 + BT0497 0.52 -2.0 615,756 - BT0497 0.52 -1.6 615,893 + BT0497 0.73 -2.9 615,903 + BT0497 0.75 -0.9 615,909 - BT0497 0.75 +1.6 616,017 + -0.0 616,124 + -0.2 616,141 + -0.0 616,178 - BT0498 0.10 -1.6 616,319 - BT0498 0.26 -1.6 616,343 - BT0498 0.29 -2.6 616,411 + BT0498 0.36 +0.4 616,412 - BT0498 0.37 -2.0 616,480 + BT0498 0.44 -0.0 616,483 - BT0498 0.45 -2.0 616,486 + BT0498 0.45 -2.0 616,652 - BT0498 0.64 -2.0 617,082 + -1.0 617,087 - +0.3 617,327 - -1.8 617,455 - -0.0 617,479 - -0.4 617,533 + -0.0 617,543 - -0.4 617,555 - -2.8 617,555 - +2.1 617,568 + BT0499 0.10 -1.0 617,663 - BT0499 0.21 -1.6 617,663 - BT0499 0.21 -0.8 617,688 + BT0499 0.23 -1.0 617,708 - BT0499 0.26 -0.3 617,717 + BT0499 0.27 -2.0 617,720 - BT0499 0.27 -3.9 617,906 - BT0499 0.48 -1.1
Or see this region's nucleotide sequence