Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1272

Experiment: MoLS4 with L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1271 and gspE are separated by 3 nucleotidesgspE and DVU1273 are separated by 288 nucleotides DVU1271: DVU1271 - general secretion pathway protein F, putative (TIGR), at 1,361,119 to 1,362,345 DVU1271 DVU1272: gspE - general secretion pathway protein E, putative (TIGR), at 1,362,349 to 1,364,070 gspE DVU1273: DVU1273 - bacterial type II/III secretion system protein (TIGR), at 1,364,359 to 1,365,933 DVU1273 Position (kb) 1362 1363 1364 1365Strain fitness (log2 ratio) -2 -1 0 1 2at 1361.373 kb on - strand, within DVU1271at 1361.436 kb on - strand, within DVU1271at 1361.450 kb on + strand, within DVU1271at 1361.489 kb on - strand, within DVU1271at 1361.520 kb on - strand, within DVU1271at 1361.587 kb on - strand, within DVU1271at 1361.661 kb on + strand, within DVU1271at 1361.822 kb on + strand, within DVU1271at 1361.825 kb on - strand, within DVU1271at 1361.830 kb on - strand, within DVU1271at 1361.890 kb on + strand, within DVU1271at 1361.898 kb on - strand, within DVU1271at 1361.905 kb on - strand, within DVU1271at 1361.911 kb on + strand, within DVU1271at 1361.959 kb on - strand, within DVU1271at 1361.991 kb on + strand, within DVU1271at 1361.994 kb on - strand, within DVU1271at 1362.089 kb on - strand, within DVU1271at 1362.113 kb on + strand, within DVU1271at 1362.174 kb on + strand, within DVU1271at 1362.228 kb on + strandat 1362.274 kb on - strandat 1362.410 kb on - strandat 1362.439 kb on + strandat 1362.439 kb on + strandat 1362.447 kb on - strandat 1362.495 kb on + strandat 1362.538 kb on - strand, within gspEat 1362.548 kb on - strand, within gspEat 1362.598 kb on - strand, within gspEat 1362.599 kb on - strand, within gspEat 1362.613 kb on + strand, within gspEat 1362.807 kb on + strand, within gspEat 1362.861 kb on + strand, within gspEat 1362.896 kb on - strand, within gspEat 1362.940 kb on + strand, within gspEat 1362.948 kb on - strand, within gspEat 1363.005 kb on + strand, within gspEat 1363.045 kb on + strand, within gspEat 1363.089 kb on + strand, within gspEat 1363.186 kb on - strand, within gspEat 1363.186 kb on - strand, within gspEat 1363.215 kb on - strand, within gspEat 1363.383 kb on + strand, within gspEat 1363.428 kb on + strand, within gspEat 1363.443 kb on - strand, within gspEat 1363.450 kb on + strand, within gspEat 1363.458 kb on - strand, within gspEat 1363.499 kb on - strand, within gspEat 1363.504 kb on - strand, within gspEat 1363.527 kb on - strand, within gspEat 1363.655 kb on + strand, within gspEat 1363.693 kb on - strand, within gspEat 1363.768 kb on - strand, within gspEat 1363.805 kb on + strand, within gspEat 1363.813 kb on + strand, within gspEat 1363.821 kb on - strand, within gspEat 1363.897 kb on - strand, within gspEat 1363.959 kb on + strandat 1363.965 kb on + strandat 1363.995 kb on + strandat 1363.995 kb on + strandat 1364.008 kb on - strandat 1364.008 kb on - strandat 1364.078 kb on - strandat 1364.108 kb on + strandat 1364.147 kb on - strandat 1364.158 kb on + strandat 1364.230 kb on + strandat 1364.297 kb on + strandat 1364.394 kb on - strandat 1364.421 kb on + strandat 1364.455 kb on - strandat 1364.507 kb on - strandat 1364.638 kb on - strand, within DVU1273at 1364.647 kb on - strand, within DVU1273at 1364.682 kb on - strand, within DVU1273at 1364.858 kb on + strand, within DVU1273at 1364.881 kb on - strand, within DVU1273at 1365.000 kb on - strand, within DVU1273at 1365.014 kb on + strand, within DVU1273at 1365.028 kb on + strand, within DVU1273

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
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1,361,373 - DVU1271 0.21 +0.7
1,361,436 - DVU1271 0.26 +0.7
1,361,450 + DVU1271 0.27 +1.9
1,361,489 - DVU1271 0.30 +0.8
1,361,520 - DVU1271 0.33 +1.1
1,361,587 - DVU1271 0.38 +0.6
1,361,661 + DVU1271 0.44 -0.0
1,361,822 + DVU1271 0.57 -0.3
1,361,825 - DVU1271 0.58 -0.3
1,361,830 - DVU1271 0.58 +0.8
1,361,890 + DVU1271 0.63 +0.6
1,361,898 - DVU1271 0.63 +1.2
1,361,905 - DVU1271 0.64 +0.3
1,361,911 + DVU1271 0.65 +0.6
1,361,959 - DVU1271 0.68 -0.4
1,361,991 + DVU1271 0.71 +1.3
1,361,994 - DVU1271 0.71 +1.1
1,362,089 - DVU1271 0.79 +0.6
1,362,113 + DVU1271 0.81 +0.7
1,362,174 + DVU1271 0.86 +0.4
1,362,228 + +0.8
1,362,274 - -0.3
1,362,410 - +0.9
1,362,439 + +0.9
1,362,439 + +0.3
1,362,447 - +1.1
1,362,495 + +1.0
1,362,538 - gspE DVU1272 0.11 +0.4
1,362,548 - gspE DVU1272 0.12 +0.3
1,362,598 - gspE DVU1272 0.14 +1.3
1,362,599 - gspE DVU1272 0.15 +0.4
1,362,613 + gspE DVU1272 0.15 +0.8
1,362,807 + gspE DVU1272 0.27 +1.2
1,362,861 + gspE DVU1272 0.30 +1.8
1,362,896 - gspE DVU1272 0.32 +1.2
1,362,940 + gspE DVU1272 0.34 +0.1
1,362,948 - gspE DVU1272 0.35 +1.0
1,363,005 + gspE DVU1272 0.38 +1.1
1,363,045 + gspE DVU1272 0.40 +0.2
1,363,089 + gspE DVU1272 0.43 +0.8
1,363,186 - gspE DVU1272 0.49 +0.5
1,363,186 - gspE DVU1272 0.49 +1.3
1,363,215 - gspE DVU1272 0.50 +1.0
1,363,383 + gspE DVU1272 0.60 +1.3
1,363,428 + gspE DVU1272 0.63 +1.3
1,363,443 - gspE DVU1272 0.64 +0.8
1,363,450 + gspE DVU1272 0.64 +0.9
1,363,458 - gspE DVU1272 0.64 +0.3
1,363,499 - gspE DVU1272 0.67 -0.4
1,363,504 - gspE DVU1272 0.67 +0.6
1,363,527 - gspE DVU1272 0.68 +0.6
1,363,655 + gspE DVU1272 0.76 +0.9
1,363,693 - gspE DVU1272 0.78 -2.4
1,363,768 - gspE DVU1272 0.82 +0.7
1,363,805 + gspE DVU1272 0.85 +0.9
1,363,813 + gspE DVU1272 0.85 +0.7
1,363,821 - gspE DVU1272 0.85 -0.2
1,363,897 - gspE DVU1272 0.90 +1.0
1,363,959 + +0.6
1,363,965 + +1.0
1,363,995 + +0.8
1,363,995 + +0.9
1,364,008 - -1.0
1,364,008 - +0.9
1,364,078 - +1.0
1,364,108 + +0.2
1,364,147 - +0.2
1,364,158 + +0.1
1,364,230 + +0.1
1,364,297 + +0.2
1,364,394 - +0.4
1,364,421 + -0.4
1,364,455 - +0.8
1,364,507 - +1.1
1,364,638 - DVU1273 0.18 +1.0
1,364,647 - DVU1273 0.18 +1.1
1,364,682 - DVU1273 0.21 +0.3
1,364,858 + DVU1273 0.32 +0.9
1,364,881 - DVU1273 0.33 +1.1
1,365,000 - DVU1273 0.41 +1.1
1,365,014 + DVU1273 0.42 +0.3
1,365,028 + DVU1273 0.42 +0.7

Or see this region's nucleotide sequence