Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2317

Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm in WT Conditioned Media in Flasks with Spin rep 1
2,385,625	+	atpE	Synpcc7942_2316	0.56	-1.2
2,385,628	-	atpE	Synpcc7942_2316	0.56	+0.6
2,385,678	+	atpE	Synpcc7942_2316	0.68	-0.4
2,385,744	-	atpE	Synpcc7942_2316	0.84	+2.6
2,385,754	-	atpE	Synpcc7942_2316	0.87	+1.6
2,385,773	+				+1.6
2,385,773	+				+1.6
2,385,775	+				-0.9
2,385,852	+				+2.7
2,385,852	+				-0.0
2,385,860	-				-1.2
2,385,860	-				+3.1
2,385,860	-				+1.6
2,385,861	-				-0.6
2,385,874	+				-2.2
2,385,876	+				+2.6
2,385,884	-				-1.0
2,385,917	-				+2.2
2,385,930	-				+1.4
2,386,000	+				+0.3
2,386,034	-				-1.3
2,386,055	-				-1.1
2,386,055	-				+2.6
2,386,055	-				-1.5
2,386,104	+				-2.2
2,386,119	+				-0.4
2,386,153	+				-2.7
2,386,160	+				-2.6
2,386,161	-				-0.5
2,386,161	-				+2.3
2,386,161	-				-0.7
2,386,168	-				+0.6
2,386,168	-				+1.6
2,386,168	-				-0.9
2,386,168	-				-1.9
2,386,176	+				-1.5
2,386,190	-				+1.6
2,386,222	+				-2.5
2,386,230	-				+0.6
2,386,297	-				-2.4
2,386,315	+				-1.3
2,386,320	+				+0.3
2,386,320	+				-0.9
2,386,323	-				-1.2
2,386,323	-				-0.9
2,386,328	-				-2.7
2,386,376	+				+1.6
2,386,384	-				-1.6
2,386,384	-				-1.7
2,386,452	-	ctaA	Synpcc7942_2317	0.10	-1.6
2,386,456	+	ctaA	Synpcc7942_2317	0.11	+1.3
2,386,479	-	ctaA	Synpcc7942_2317	0.12	+0.6
2,386,482	+	ctaA	Synpcc7942_2317	0.12	+1.6
2,386,487	+	ctaA	Synpcc7942_2317	0.12	-1.4
2,386,492	+	ctaA	Synpcc7942_2317	0.12	+1.6
2,386,492	+	ctaA	Synpcc7942_2317	0.12	-0.8
2,386,492	+	ctaA	Synpcc7942_2317	0.12	+0.6
2,386,492	+	ctaA	Synpcc7942_2317	0.12	-2.3
2,386,492	+	ctaA	Synpcc7942_2317	0.12	-1.9
2,386,492	+	ctaA	Synpcc7942_2317	0.12	+0.9
2,386,492	+	ctaA	Synpcc7942_2317	0.12	+2.7
2,386,500	-	ctaA	Synpcc7942_2317	0.12	-1.1
2,386,500	-	ctaA	Synpcc7942_2317	0.12	-1.0
2,386,500	-	ctaA	Synpcc7942_2317	0.12	-1.7
2,386,500	-	ctaA	Synpcc7942_2317	0.12	-0.7
2,386,500	-	ctaA	Synpcc7942_2317	0.12	-1.2
2,386,500	-	ctaA	Synpcc7942_2317	0.12	-1.6
2,386,500	-	ctaA	Synpcc7942_2317	0.12	-0.9
2,386,500	-	ctaA	Synpcc7942_2317	0.12	+0.2
2,386,533	-	ctaA	Synpcc7942_2317	0.14	+0.6
2,386,587	+				-0.7
2,386,594	+	ctaA	Synpcc7942_2317	0.16	-1.0
2,386,673	-	ctaA	Synpcc7942_2317	0.20	+1.6
2,386,723	+	ctaA	Synpcc7942_2317	0.22	+0.8
2,386,783	+	ctaA	Synpcc7942_2317	0.24	-1.3
2,386,797	+	ctaA	Synpcc7942_2317	0.25	+2.2
2,386,805	-				-2.5
2,386,807	+	ctaA	Synpcc7942_2317	0.25	-3.1
2,386,815	-	ctaA	Synpcc7942_2317	0.26	+1.6
2,386,837	+				+1.6
2,386,925	+				+0.6
2,386,930	+	ctaA	Synpcc7942_2317	0.31	-0.7
2,387,019	-	ctaA	Synpcc7942_2317	0.34	-0.8
2,387,047	+	ctaA	Synpcc7942_2317	0.36	+0.0
2,387,187	-	ctaA	Synpcc7942_2317	0.41	+3.2
2,387,212	+	ctaA	Synpcc7942_2317	0.42	-2.2
2,387,217	+	ctaA	Synpcc7942_2317	0.43	-0.7
2,387,229	+	ctaA	Synpcc7942_2317	0.43	+1.6
2,387,237	-	ctaA	Synpcc7942_2317	0.44	+2.6
2,387,244	+	ctaA	Synpcc7942_2317	0.44	-0.6
2,387,258	-	ctaA	Synpcc7942_2317	0.44	+1.6
2,387,261	+	ctaA	Synpcc7942_2317	0.45	+0.9
2,387,261	+	ctaA	Synpcc7942_2317	0.45	+2.6
2,387,268	-	ctaA	Synpcc7942_2317	0.45	-1.5
2,387,271	+	ctaA	Synpcc7942_2317	0.45	-0.4
2,387,279	+	ctaA	Synpcc7942_2317	0.45	-1.1
2,387,284	+	ctaA	Synpcc7942_2317	0.46	-2.3
2,387,331	+	ctaA	Synpcc7942_2317	0.47	-3.2
2,387,347	-	ctaA	Synpcc7942_2317	0.48	+1.2
2,387,347	-	ctaA	Synpcc7942_2317	0.48	-0.8
2,387,365	+	ctaA	Synpcc7942_2317	0.49	-1.8
2,387,388	-	ctaA	Synpcc7942_2317	0.50	-0.1
2,387,431	+	ctaA	Synpcc7942_2317	0.52	-0.9
2,387,448	+	ctaA	Synpcc7942_2317	0.52	-1.1
2,387,448	+	ctaA	Synpcc7942_2317	0.52	-1.2
2,387,457	-	ctaA	Synpcc7942_2317	0.53	-0.7
2,387,463	-	ctaA	Synpcc7942_2317	0.53	+1.6
2,387,515	+	ctaA	Synpcc7942_2317	0.55	-2.0
2,387,523	-	ctaA	Synpcc7942_2317	0.56	-3.0
2,387,549	+	ctaA	Synpcc7942_2317	0.57	+4.2
2,387,600	+	ctaA	Synpcc7942_2317	0.59	-0.1
2,387,618	-	ctaA	Synpcc7942_2317	0.60	+2.6
2,387,625	+	ctaA	Synpcc7942_2317	0.60	-1.6
2,387,633	-	ctaA	Synpcc7942_2317	0.60	+0.0
2,387,634	+	ctaA	Synpcc7942_2317	0.60	-1.5
2,387,647	-	ctaA	Synpcc7942_2317	0.61	-1.1
2,387,658	+	ctaA	Synpcc7942_2317	0.61	+1.6
2,387,660	+	ctaA	Synpcc7942_2317	0.61	+1.6
2,387,696	+	ctaA	Synpcc7942_2317	0.63	-0.7
2,387,742	-	ctaA	Synpcc7942_2317	0.65	+0.6
2,387,762	+	ctaA	Synpcc7942_2317	0.66	-3.6
2,387,803	+	ctaA	Synpcc7942_2317	0.67	+2.2
2,387,824	-	ctaA	Synpcc7942_2317	0.68	-0.7
2,387,834	-	ctaA	Synpcc7942_2317	0.69	-1.4
2,387,835	-	ctaA	Synpcc7942_2317	0.69	+1.0
2,387,893	+	ctaA	Synpcc7942_2317	0.71	+1.6
2,387,919	+	ctaA	Synpcc7942_2317	0.72	-0.8
2,387,931	+	ctaA	Synpcc7942_2317	0.73	+1.6
2,387,931	+	ctaA	Synpcc7942_2317	0.73	+2.0
2,387,950	-	ctaA	Synpcc7942_2317	0.74	+1.2
2,387,960	-	ctaA	Synpcc7942_2317	0.74	-0.6
2,387,998	+	ctaA	Synpcc7942_2317	0.76	-0.5
2,388,008	+	ctaA	Synpcc7942_2317	0.76	-1.4
2,388,013	+	ctaA	Synpcc7942_2317	0.76	+0.6
2,388,016	-	ctaA	Synpcc7942_2317	0.76	-1.7
2,388,016	-	ctaA	Synpcc7942_2317	0.76	-2.9
2,388,021	-	ctaA	Synpcc7942_2317	0.77	-2.2
2,388,058	-	ctaA	Synpcc7942_2317	0.78	-1.8
2,388,058	-	ctaA	Synpcc7942_2317	0.78	+1.6
2,388,068	-	ctaA	Synpcc7942_2317	0.79	-0.3
2,388,073	-	ctaA	Synpcc7942_2317	0.79	+1.6
2,388,099	-	ctaA	Synpcc7942_2317	0.80	+2.6
2,388,104	-	ctaA	Synpcc7942_2317	0.80	-1.2
2,388,142	+	ctaA	Synpcc7942_2317	0.82	-0.2
2,388,142	+	ctaA	Synpcc7942_2317	0.82	+2.8
2,388,174	+	ctaA	Synpcc7942_2317	0.83	-1.4
2,388,175	-	ctaA	Synpcc7942_2317	0.83	+1.5
2,388,206	-	ctaA	Synpcc7942_2317	0.84	+0.0
2,388,208	+	ctaA	Synpcc7942_2317	0.84	+0.6
2,388,261	+	ctaA	Synpcc7942_2317	0.87	+0.6
2,388,261	+	ctaA	Synpcc7942_2317	0.87	+1.6
2,388,261	+	ctaA	Synpcc7942_2317	0.87	-0.2
2,388,269	-	ctaA	Synpcc7942_2317	0.87	-0.9
2,388,315	-	ctaA	Synpcc7942_2317	0.89	-4.1
2,388,375	+				-0.1
2,388,432	+				-0.9
2,388,456	-				+2.3
2,388,539	+				+2.2
2,388,545	+				+0.6
2,388,570	-				+0.3
2,388,577	+				-0.8
2,388,580	-				+1.0
2,388,582	+				-0.4
2,388,585	-				+2.0
2,388,594	-				-2.2
2,388,598	+				+3.3
2,388,603	+				-2.0
2,388,603	+				-0.2
2,388,603	+				-0.4
2,388,603	+				+0.6
2,388,603	+				-0.0
2,388,603	+				+2.6
2,388,603	+				-1.7
2,388,611	-				-0.6
2,388,611	-				+3.2
2,388,611	-				-1.8
2,388,631	+				-0.1
2,388,639	-				+3.1
2,388,639	-				+1.3
2,388,670	-				+0.2
2,388,670	-				-0.7
2,388,670	-				+1.6
2,388,670	-				-1.0
2,388,727	-				+0.1
2,388,734	+				-1.3
2,388,742	-				+1.6
2,388,755	-				+2.8
2,388,843	-		Synpcc7942_2318	0.15	-1.9
2,388,883	+		Synpcc7942_2318	0.21	-1.1
2,388,932	-		Synpcc7942_2318	0.29	-1.2
2,388,953	+		Synpcc7942_2318	0.33	-0.7
2,388,953	+		Synpcc7942_2318	0.33	+0.6
2,388,961	-		Synpcc7942_2318	0.34	-1.0
2,388,961	-		Synpcc7942_2318	0.34	+3.6
2,388,983	+		Synpcc7942_2318	0.37	-1.2
2,388,990	+		Synpcc7942_2318	0.38	-1.7
2,389,000	+		Synpcc7942_2318	0.40	+0.6
2,389,013	-		Synpcc7942_2318	0.42	-0.4
2,389,013	-		Synpcc7942_2318	0.42	+3.6
2,389,024	+		Synpcc7942_2318	0.44	-3.4
2,389,040	+		Synpcc7942_2318	0.46	+0.9
2,389,040	+		Synpcc7942_2318	0.46	-3.7
2,389,040	+		Synpcc7942_2318	0.46	-1.4
2,389,042	-		Synpcc7942_2318	0.47	-1.1
2,389,052	+		Synpcc7942_2318	0.48	+1.6
2,389,075	+		Synpcc7942_2318	0.52	-1.9
2,389,108	-		Synpcc7942_2318	0.57	-2.1
2,389,108	-		Synpcc7942_2318	0.57	-0.9
2,389,108	-		Synpcc7942_2318	0.57	+2.5
2,389,121	+		Synpcc7942_2318	0.59	-0.4
2,389,125	+		Synpcc7942_2318	0.60	+1.6
2,389,131	-		Synpcc7942_2318	0.61	+0.9
2,389,161	-		Synpcc7942_2318	0.66	-1.2
2,389,168	-		Synpcc7942_2318	0.67	+0.0
2,389,201	-		Synpcc7942_2318	0.72	+1.6
2,389,221	+		Synpcc7942_2318	0.75	+2.6
2,389,231	+		Synpcc7942_2318	0.77	-1.0
2,389,236	+		Synpcc7942_2318	0.78	-1.4
2,389,251	+		Synpcc7942_2318	0.80	+0.6
2,389,257	-		Synpcc7942_2318	0.81	-1.8
2,389,259	-		Synpcc7942_2318	0.81	-2.0
2,389,261	+		Synpcc7942_2318	0.82	+0.6
2,389,261	+		Synpcc7942_2318	0.82	-0.2
2,389,261	+		Synpcc7942_2318	0.82	+0.6
2,389,261	+		Synpcc7942_2318	0.82	-1.6
2,389,269	-		Synpcc7942_2318	0.83	+1.6
2,389,270	-		Synpcc7942_2318	0.83	-2.8
2,389,304	+		Synpcc7942_2318	0.89	+1.3
2,389,304	+		Synpcc7942_2318	0.89	+3.5
2,389,304	+		Synpcc7942_2318	0.89	+2.0
2,389,312	-		Synpcc7942_2318	0.90	+0.3
2,389,312	-		Synpcc7942_2318	0.90	-0.8
2,389,312	-		Synpcc7942_2318	0.90	-3.8
2,389,312	-		Synpcc7942_2318	0.90	-1.0
2,389,312	-		Synpcc7942_2318	0.90	-1.7
2,389,312	-		Synpcc7942_2318	0.90	-1.3
2,389,334	+				+1.4
2,389,342	-				+0.6
2,389,378	-				-1.1
2,389,402	-				+0.6
2,389,415	+				-1.0
2,389,423	+				-1.0
2,389,436	-		Synpcc7942_2319	0.12	-0.3
2,389,460	-		Synpcc7942_2319	0.23	-1.1
2,389,464	+		Synpcc7942_2319	0.25	+2.1
2,389,464	+		Synpcc7942_2319	0.25	-0.8
2,389,467	-		Synpcc7942_2319	0.26	-1.0
2,389,472	-		Synpcc7942_2319	0.29	+1.1
2,389,472	-		Synpcc7942_2319	0.29	-2.8
2,389,472	-		Synpcc7942_2319	0.29	-1.2
2,389,472	-		Synpcc7942_2319	0.29	-1.1
2,389,480	-		Synpcc7942_2319	0.32	+2.6