Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt folC and Synpcc7942_0945 are separated by 52 nucleotides Synpcc7942_0945 and aoxA are separated by 373 nucleotides
Synpcc7942_0944: folC - FolC bifunctional protein, at 951,502 to 952,740
folC
Synpcc7942_0945: Synpcc7942_0945 - hypothetical protein, at 952,793 to 953,767
_0945
Synpcc7942_0946: aoxA - UDP-galactopyranose mutase, at 954,141 to 955,628
aoxA
Position (kb) 952
953
954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 952.790 kb on + strand at 952.841 kb on - strand at 952.855 kb on - strand at 953.031 kb on + strand, within Synpcc7942_0945 at 953.096 kb on + strand, within Synpcc7942_0945 at 953.191 kb on + strand, within Synpcc7942_0945 at 953.425 kb on + strand, within Synpcc7942_0945 at 953.443 kb on - strand, within Synpcc7942_0945 at 953.514 kb on + strand, within Synpcc7942_0945 at 953.613 kb on - strand, within Synpcc7942_0945 at 953.613 kb on - strand, within Synpcc7942_0945 at 953.648 kb on - strand, within Synpcc7942_0945 at 953.650 kb on - strand, within Synpcc7942_0945 at 953.652 kb on + strand, within Synpcc7942_0945 at 953.675 kb on + strand at 953.675 kb on + strand at 953.679 kb on + strand at 953.710 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.720 kb on - strand at 953.720 kb on - strand at 953.720 kb on - strand at 953.827 kb on + strand at 953.850 kb on + strand at 953.874 kb on + strand at 953.911 kb on + strand at 953.928 kb on - strand at 954.001 kb on - strand at 954.037 kb on - strand at 954.057 kb on - strand at 954.060 kb on - strand at 954.071 kb on + strand at 954.075 kb on - strand at 954.075 kb on - strand at 954.170 kb on + strand at 954.178 kb on - strand at 954.230 kb on + strand at 954.231 kb on + strand at 954.238 kb on - strand at 954.239 kb on - strand at 954.239 kb on - strand at 954.244 kb on - strand at 954.250 kb on - strand at 954.250 kb on - strand at 954.252 kb on + strand at 954.260 kb on - strand at 954.267 kb on + strand at 954.267 kb on + strand at 954.275 kb on - strand at 954.302 kb on - strand, within aoxA at 954.326 kb on - strand at 954.372 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.397 kb on - strand, within aoxA at 954.397 kb on - strand, within aoxA at 954.407 kb on - strand, within aoxA at 954.431 kb on - strand, within aoxA at 954.446 kb on - strand, within aoxA at 954.447 kb on - strand, within aoxA at 954.468 kb on - strand, within aoxA at 954.480 kb on + strand, within aoxA at 954.482 kb on - strand, within aoxA at 954.492 kb on - strand, within aoxA at 954.546 kb on + strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.566 kb on + strand, within aoxA at 954.567 kb on - strand, within aoxA at 954.569 kb on - strand, within aoxA at 954.569 kb on - strand, within aoxA at 954.595 kb on + strand, within aoxA at 954.595 kb on + strand, within aoxA at 954.606 kb on + strand, within aoxA at 954.608 kb on + strand, within aoxA at 954.608 kb on + strand, within aoxA at 954.614 kb on - strand, within aoxA at 954.614 kb on - strand, within aoxA at 954.635 kb on + strand, within aoxA at 954.651 kb on + strand, within aoxA at 954.654 kb on - strand, within aoxA at 954.662 kb on + strand, within aoxA at 954.673 kb on + strand, within aoxA at 954.683 kb on - strand, within aoxA at 954.718 kb on - strand, within aoxA at 954.718 kb on - strand, within aoxA at 954.729 kb on + strand, within aoxA at 954.737 kb on + strand, within aoxA at 954.737 kb on - strand, within aoxA at 954.744 kb on - strand, within aoxA
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Flasks with Spin rep 1 remove 952,790 + -0.4 952,841 - -1.9 952,855 - -2.1 953,031 + Synpcc7942_0945 0.24 -1.2 953,096 + Synpcc7942_0945 0.31 +1.6 953,191 + Synpcc7942_0945 0.41 +1.6 953,425 + Synpcc7942_0945 0.65 -1.8 953,443 - Synpcc7942_0945 0.67 +1.1 953,514 + Synpcc7942_0945 0.74 -1.6 953,613 - Synpcc7942_0945 0.84 -1.1 953,613 - Synpcc7942_0945 0.84 -1.2 953,648 - Synpcc7942_0945 0.88 -1.2 953,650 - Synpcc7942_0945 0.88 -1.3 953,652 + Synpcc7942_0945 0.88 +0.6 953,675 + -1.1 953,675 + -2.3 953,679 + +0.1 953,710 + +1.6 953,712 + -1.6 953,712 + +1.6 953,712 + +2.4 953,712 + -1.5 953,720 - -1.1 953,720 - +0.9 953,720 - +1.2 953,827 + -0.9 953,850 + +2.9 953,874 + +0.6 953,911 + +1.6 953,928 - +1.6 954,001 - -0.4 954,037 - -0.6 954,057 - -1.8 954,060 - -0.9 954,071 + +0.2 954,075 - -0.4 954,075 - -0.5 954,170 + -2.8 954,178 - -1.4 954,230 + +0.4 954,231 + -1.1 954,238 - -0.0 954,239 - +0.4 954,239 - +1.6 954,244 - -0.3 954,250 - -0.2 954,250 - +2.1 954,252 + -0.4 954,260 - -1.5 954,267 + +2.5 954,267 + -4.1 954,275 - +1.3 954,302 - aoxA Synpcc7942_0946 0.11 +0.5 954,326 - -0.4 954,372 + aoxA Synpcc7942_0946 0.16 -2.2 954,389 + aoxA Synpcc7942_0946 0.17 +2.2 954,389 + aoxA Synpcc7942_0946 0.17 -0.2 954,389 + aoxA Synpcc7942_0946 0.17 +0.3 954,389 + aoxA Synpcc7942_0946 0.17 +0.1 954,389 + aoxA Synpcc7942_0946 0.17 -0.8 954,389 + aoxA Synpcc7942_0946 0.17 +1.6 954,397 - aoxA Synpcc7942_0946 0.17 +0.8 954,397 - aoxA Synpcc7942_0946 0.17 -0.9 954,407 - aoxA Synpcc7942_0946 0.18 -1.9 954,431 - aoxA Synpcc7942_0946 0.19 -1.1 954,446 - aoxA Synpcc7942_0946 0.20 -2.0 954,447 - aoxA Synpcc7942_0946 0.21 -1.7 954,468 - aoxA Synpcc7942_0946 0.22 -0.8 954,480 + aoxA Synpcc7942_0946 0.23 -0.3 954,482 - aoxA Synpcc7942_0946 0.23 -4.4 954,492 - aoxA Synpcc7942_0946 0.24 +1.6 954,546 + aoxA Synpcc7942_0946 0.27 -2.4 954,554 - aoxA Synpcc7942_0946 0.28 +1.6 954,554 - aoxA Synpcc7942_0946 0.28 -0.3 954,554 - aoxA Synpcc7942_0946 0.28 -2.3 954,554 - aoxA Synpcc7942_0946 0.28 -0.8 954,566 + aoxA Synpcc7942_0946 0.29 +1.6 954,567 - aoxA Synpcc7942_0946 0.29 -1.3 954,569 - aoxA Synpcc7942_0946 0.29 +0.6 954,569 - aoxA Synpcc7942_0946 0.29 +0.5 954,595 + aoxA Synpcc7942_0946 0.31 -1.6 954,595 + aoxA Synpcc7942_0946 0.31 +1.1 954,606 + aoxA Synpcc7942_0946 0.31 -1.4 954,608 + aoxA Synpcc7942_0946 0.31 -3.1 954,608 + aoxA Synpcc7942_0946 0.31 -0.6 954,614 - aoxA Synpcc7942_0946 0.32 +1.6 954,614 - aoxA Synpcc7942_0946 0.32 +0.6 954,635 + aoxA Synpcc7942_0946 0.33 -1.3 954,651 + aoxA Synpcc7942_0946 0.34 +1.0 954,654 - aoxA Synpcc7942_0946 0.34 -0.6 954,662 + aoxA Synpcc7942_0946 0.35 -3.4 954,673 + aoxA Synpcc7942_0946 0.36 -1.3 954,683 - aoxA Synpcc7942_0946 0.36 -0.5 954,718 - aoxA Synpcc7942_0946 0.39 +0.1 954,718 - aoxA Synpcc7942_0946 0.39 +1.9 954,729 + aoxA Synpcc7942_0946 0.40 +0.6 954,737 + aoxA Synpcc7942_0946 0.40 +1.6 954,737 - aoxA Synpcc7942_0946 0.40 +2.3 954,744 - aoxA Synpcc7942_0946 0.41 -0.8
Or see this region's nucleotide sequence