Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0934

Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxB and narM are separated by 17 nucleotidesnarM and Synpcc7942_0934 are separated by 69 nucleotidesSynpcc7942_0934 and Synpcc7942_0935 are separated by 11 nucleotidesSynpcc7942_0935 and Synpcc7942_0936 are separated by 4 nucleotides Synpcc7942_0932: lpxB - lipid-A-disaccharide synthase, at 939,193 to 940,392 lpxB Synpcc7942_0933: narM - hypothetical protein, at 940,410 to 940,925 narM Synpcc7942_0934: Synpcc7942_0934 - hypothetical protein, at 940,995 to 942,056 _0934 Synpcc7942_0935: Synpcc7942_0935 - hypothetical protein, at 942,068 to 942,838 _0935 Synpcc7942_0936: Synpcc7942_0936 - Rhodanese-like, at 942,843 to 943,388 _0936 Position (kb) 940 941 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 940.395 kb on + strandat 940.889 kb on - strandat 940.908 kb on + strandat 940.949 kb on - strandat 941.008 kb on + strandat 941.020 kb on + strandat 941.020 kb on + strandat 941.066 kb on + strandat 941.066 kb on + strandat 941.085 kb on - strandat 941.123 kb on + strand, within Synpcc7942_0934at 941.131 kb on - strand, within Synpcc7942_0934at 941.200 kb on - strand, within Synpcc7942_0934at 941.200 kb on - strand, within Synpcc7942_0934at 941.217 kb on + strand, within Synpcc7942_0934at 941.236 kb on - strand, within Synpcc7942_0934at 941.250 kb on + strand, within Synpcc7942_0934at 941.250 kb on + strand, within Synpcc7942_0934at 941.250 kb on + strand, within Synpcc7942_0934at 941.255 kb on + strand, within Synpcc7942_0934at 941.258 kb on - strand, within Synpcc7942_0934at 941.258 kb on - strand, within Synpcc7942_0934at 941.369 kb on + strand, within Synpcc7942_0934at 941.377 kb on - strand, within Synpcc7942_0934at 941.381 kb on + strand, within Synpcc7942_0934at 941.405 kb on + strand, within Synpcc7942_0934at 941.431 kb on + strand, within Synpcc7942_0934at 941.462 kb on + strand, within Synpcc7942_0934at 941.462 kb on + strand, within Synpcc7942_0934at 941.462 kb on + strand, within Synpcc7942_0934at 941.466 kb on + strand, within Synpcc7942_0934at 941.472 kb on + strand, within Synpcc7942_0934at 941.506 kb on + strand, within Synpcc7942_0934at 941.513 kb on + strand, within Synpcc7942_0934at 941.521 kb on - strand, within Synpcc7942_0934at 941.540 kb on - strandat 941.583 kb on + strand, within Synpcc7942_0934at 941.658 kb on - strand, within Synpcc7942_0934at 941.699 kb on - strand, within Synpcc7942_0934at 941.712 kb on - strand, within Synpcc7942_0934at 941.800 kb on - strand, within Synpcc7942_0934at 941.803 kb on + strand, within Synpcc7942_0934at 941.845 kb on - strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.894 kb on + strand, within Synpcc7942_0934at 941.912 kb on - strand, within Synpcc7942_0934at 941.946 kb on - strandat 941.957 kb on + strandat 941.965 kb on - strandat 942.024 kb on + strandat 942.058 kb on - strandat 942.058 kb on - strandat 942.095 kb on - strandat 942.097 kb on - strandat 942.112 kb on + strandat 942.130 kb on + strandat 942.140 kb on - strandat 942.144 kb on + strandat 942.155 kb on + strand, within Synpcc7942_0935at 942.170 kb on + strand, within Synpcc7942_0935at 942.171 kb on + strand, within Synpcc7942_0935at 942.178 kb on - strand, within Synpcc7942_0935at 942.179 kb on - strand, within Synpcc7942_0935at 942.188 kb on - strand, within Synpcc7942_0935at 942.191 kb on + strand, within Synpcc7942_0935at 942.199 kb on + strand, within Synpcc7942_0935at 942.199 kb on - strand, within Synpcc7942_0935at 942.214 kb on - strand, within Synpcc7942_0935at 942.219 kb on + strand, within Synpcc7942_0935at 942.219 kb on + strand, within Synpcc7942_0935at 942.227 kb on - strand, within Synpcc7942_0935at 942.227 kb on - strand, within Synpcc7942_0935at 942.229 kb on + strand, within Synpcc7942_0935at 942.229 kb on + strand, within Synpcc7942_0935at 942.229 kb on + strand, within Synpcc7942_0935at 942.248 kb on - strand, within Synpcc7942_0935at 942.259 kb on - strandat 942.283 kb on + strand, within Synpcc7942_0935at 942.286 kb on + strand, within Synpcc7942_0935at 942.319 kb on - strand, within Synpcc7942_0935at 942.329 kb on - strand, within Synpcc7942_0935at 942.361 kb on + strand, within Synpcc7942_0935at 942.366 kb on + strand, within Synpcc7942_0935at 942.379 kb on - strand, within Synpcc7942_0935at 942.388 kb on + strand, within Synpcc7942_0935at 942.394 kb on + strand, within Synpcc7942_0935at 942.410 kb on + strand, within Synpcc7942_0935at 942.460 kb on - strand, within Synpcc7942_0935at 942.460 kb on - strand, within Synpcc7942_0935at 942.493 kb on + strand, within Synpcc7942_0935at 942.494 kb on - strand, within Synpcc7942_0935at 942.501 kb on - strand, within Synpcc7942_0935at 942.501 kb on - strand, within Synpcc7942_0935at 942.560 kb on + strand, within Synpcc7942_0935at 942.576 kb on - strand, within Synpcc7942_0935at 942.590 kb on + strand, within Synpcc7942_0935at 942.590 kb on - strand, within Synpcc7942_0935at 942.599 kb on - strand, within Synpcc7942_0935at 942.614 kb on + strand, within Synpcc7942_0935at 942.619 kb on + strand, within Synpcc7942_0935at 942.619 kb on - strand, within Synpcc7942_0935at 942.624 kb on + strand, within Synpcc7942_0935at 942.624 kb on + strand, within Synpcc7942_0935at 942.624 kb on + strandat 942.632 kb on - strand, within Synpcc7942_0935at 942.632 kb on - strand, within Synpcc7942_0935at 942.632 kb on - strand, within Synpcc7942_0935at 942.647 kb on - strand, within Synpcc7942_0935at 942.661 kb on + strand, within Synpcc7942_0935at 942.679 kb on - strand, within Synpcc7942_0935at 942.694 kb on + strand, within Synpcc7942_0935at 942.694 kb on + strand, within Synpcc7942_0935at 942.739 kb on + strand, within Synpcc7942_0935at 942.766 kb on - strandat 942.787 kb on + strandat 942.801 kb on - strandat 942.814 kb on - strandat 942.828 kb on + strandat 942.831 kb on - strandat 942.848 kb on - strandat 942.849 kb on - strandat 942.895 kb on + strandat 942.912 kb on + strand, within Synpcc7942_0936at 942.912 kb on + strandat 942.912 kb on + strand, within Synpcc7942_0936at 942.917 kb on + strand, within Synpcc7942_0936at 942.920 kb on - strand, within Synpcc7942_0936at 942.929 kb on + strand, within Synpcc7942_0936at 942.941 kb on + strand, within Synpcc7942_0936at 942.947 kb on + strand, within Synpcc7942_0936at 942.958 kb on - strand, within Synpcc7942_0936at 942.971 kb on - strand, within Synpcc7942_0936at 942.974 kb on + strand, within Synpcc7942_0936at 942.984 kb on + strand, within Synpcc7942_0936at 942.992 kb on - strand, within Synpcc7942_0936at 943.004 kb on - strand, within Synpcc7942_0936at 943.005 kb on + strand, within Synpcc7942_0936at 943.027 kb on + strand, within Synpcc7942_0936at 943.046 kb on - strand, within Synpcc7942_0936

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Flasks with Spin rep 1
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940,395 + +2.9
940,889 - -0.8
940,908 + -0.8
940,949 - -2.5
941,008 + +0.1
941,020 + +0.7
941,020 + -1.0
941,066 + +2.2
941,066 + +4.1
941,085 - -1.7
941,123 + Synpcc7942_0934 0.12 -0.7
941,131 - Synpcc7942_0934 0.13 -3.3
941,200 - Synpcc7942_0934 0.19 +2.7
941,200 - Synpcc7942_0934 0.19 -0.9
941,217 + Synpcc7942_0934 0.21 +0.7
941,236 - Synpcc7942_0934 0.23 -0.9
941,250 + Synpcc7942_0934 0.24 -1.8
941,250 + Synpcc7942_0934 0.24 -1.9
941,250 + Synpcc7942_0934 0.24 -1.3
941,255 + Synpcc7942_0934 0.24 +1.1
941,258 - Synpcc7942_0934 0.25 +2.7
941,258 - Synpcc7942_0934 0.25 -0.7
941,369 + Synpcc7942_0934 0.35 -2.4
941,377 - Synpcc7942_0934 0.36 -2.4
941,381 + Synpcc7942_0934 0.36 +0.7
941,405 + Synpcc7942_0934 0.39 +2.7
941,431 + Synpcc7942_0934 0.41 -1.7
941,462 + Synpcc7942_0934 0.44 -0.3
941,462 + Synpcc7942_0934 0.44 +1.7
941,462 + Synpcc7942_0934 0.44 +0.7
941,466 + Synpcc7942_0934 0.44 +3.2
941,472 + Synpcc7942_0934 0.45 -0.5
941,506 + Synpcc7942_0934 0.48 -3.1
941,513 + Synpcc7942_0934 0.49 -1.7
941,521 - Synpcc7942_0934 0.50 -1.5
941,540 - +0.2
941,583 + Synpcc7942_0934 0.55 +0.7
941,658 - Synpcc7942_0934 0.62 +0.7
941,699 - Synpcc7942_0934 0.66 -1.9
941,712 - Synpcc7942_0934 0.68 -0.2
941,800 - Synpcc7942_0934 0.76 +0.7
941,803 + Synpcc7942_0934 0.76 +3.2
941,845 - Synpcc7942_0934 0.80 +0.7
941,847 + Synpcc7942_0934 0.80 -0.1
941,847 + Synpcc7942_0934 0.80 -0.7
941,847 + Synpcc7942_0934 0.80 +1.7
941,847 + Synpcc7942_0934 0.80 +1.1
941,847 + Synpcc7942_0934 0.80 +1.2
941,894 + Synpcc7942_0934 0.85 +1.9
941,912 - Synpcc7942_0934 0.86 -1.4
941,946 - +0.4
941,957 + -1.1
941,965 - -0.4
942,024 + -0.9
942,058 - +1.2
942,058 - -0.6
942,095 - +0.1
942,097 - -0.2
942,112 + -0.9
942,130 + +2.7
942,140 - +1.4
942,144 + +3.1
942,155 + Synpcc7942_0935 0.11 +2.2
942,170 + Synpcc7942_0935 0.13 -0.8
942,171 + Synpcc7942_0935 0.13 +0.7
942,178 - Synpcc7942_0935 0.14 +1.7
942,179 - Synpcc7942_0935 0.14 -0.9
942,188 - Synpcc7942_0935 0.16 -0.5
942,191 + Synpcc7942_0935 0.16 -1.9
942,199 + Synpcc7942_0935 0.17 +2.7
942,199 - Synpcc7942_0935 0.17 +4.7
942,214 - Synpcc7942_0935 0.19 -2.1
942,219 + Synpcc7942_0935 0.20 +2.7
942,219 + Synpcc7942_0935 0.20 -1.1
942,227 - Synpcc7942_0935 0.21 -0.7
942,227 - Synpcc7942_0935 0.21 -1.2
942,229 + Synpcc7942_0935 0.21 +3.7
942,229 + Synpcc7942_0935 0.21 +1.8
942,229 + Synpcc7942_0935 0.21 +3.7
942,248 - Synpcc7942_0935 0.23 +3.1
942,259 - +0.1
942,283 + Synpcc7942_0935 0.28 -0.3
942,286 + Synpcc7942_0935 0.28 +1.8
942,319 - Synpcc7942_0935 0.33 +1.7
942,329 - Synpcc7942_0935 0.34 -0.6
942,361 + Synpcc7942_0935 0.38 -0.3
942,366 + Synpcc7942_0935 0.39 +1.4
942,379 - Synpcc7942_0935 0.40 -2.3
942,388 + Synpcc7942_0935 0.42 +1.7
942,394 + Synpcc7942_0935 0.42 -1.2
942,410 + Synpcc7942_0935 0.44 +1.7
942,460 - Synpcc7942_0935 0.51 +1.7
942,460 - Synpcc7942_0935 0.51 -1.2
942,493 + Synpcc7942_0935 0.55 +2.4
942,494 - Synpcc7942_0935 0.55 -1.9
942,501 - Synpcc7942_0935 0.56 -1.3
942,501 - Synpcc7942_0935 0.56 -1.2
942,560 + Synpcc7942_0935 0.64 +1.1
942,576 - Synpcc7942_0935 0.66 -2.6
942,590 + Synpcc7942_0935 0.68 +0.7
942,590 - Synpcc7942_0935 0.68 -1.2
942,599 - Synpcc7942_0935 0.69 -0.3
942,614 + Synpcc7942_0935 0.71 +2.7
942,619 + Synpcc7942_0935 0.71 -0.3
942,619 - Synpcc7942_0935 0.71 +1.1
942,624 + Synpcc7942_0935 0.72 -1.4
942,624 + Synpcc7942_0935 0.72 +1.0
942,624 + -0.7
942,632 - Synpcc7942_0935 0.73 +0.1
942,632 - Synpcc7942_0935 0.73 +3.2
942,632 - Synpcc7942_0935 0.73 -0.2
942,647 - Synpcc7942_0935 0.75 -0.3
942,661 + Synpcc7942_0935 0.77 -1.1
942,679 - Synpcc7942_0935 0.79 +0.1
942,694 + Synpcc7942_0935 0.81 -1.7
942,694 + Synpcc7942_0935 0.81 +2.7
942,739 + Synpcc7942_0935 0.87 +1.7
942,766 - -0.3
942,787 + -0.6
942,801 - +0.6
942,814 - -0.5
942,828 + -1.0
942,831 - -0.5
942,848 - -2.3
942,849 - -1.1
942,895 + +0.8
942,912 + Synpcc7942_0936 0.13 +0.9
942,912 + +3.2
942,912 + Synpcc7942_0936 0.13 +1.8
942,917 + Synpcc7942_0936 0.14 +1.6
942,920 - Synpcc7942_0936 0.14 -0.4
942,929 + Synpcc7942_0936 0.16 -2.5
942,941 + Synpcc7942_0936 0.18 +0.1
942,947 + Synpcc7942_0936 0.19 -0.2
942,958 - Synpcc7942_0936 0.21 -0.4
942,971 - Synpcc7942_0936 0.23 -0.9
942,974 + Synpcc7942_0936 0.24 +1.6
942,984 + Synpcc7942_0936 0.26 -1.7
942,992 - Synpcc7942_0936 0.27 -2.5
943,004 - Synpcc7942_0936 0.29 -1.3
943,005 + Synpcc7942_0936 0.30 -1.2
943,027 + Synpcc7942_0936 0.34 -0.7
943,046 - Synpcc7942_0936 0.37 -1.3

Or see this region's nucleotide sequence