Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0824 and Synpcc7942_0825 are separated by 60 nucleotides Synpcc7942_0825 and Synpcc7942_0826 are separated by 38 nucleotides Synpcc7942_0826 and cobW are separated by 128 nucleotides
Synpcc7942_0824: Synpcc7942_0824 - hypothetical protein, at 818,189 to 819,895
_0824
Synpcc7942_0825: Synpcc7942_0825 - hypothetical protein, at 819,956 to 820,654
_0825
Synpcc7942_0826: Synpcc7942_0826 - hypothetical protein, at 820,693 to 821,628
_0826
Synpcc7942_0827: cobW - cobalamin synthesis protein cobW-like, at 821,757 to 822,803
cobW
Position (kb) 820
821
822 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 819.708 kb on + strand, within Synpcc7942_0824 at 819.761 kb on - strand at 819.792 kb on + strand at 819.800 kb on - strand at 819.818 kb on + strand at 819.818 kb on + strand at 820.229 kb on - strand, within Synpcc7942_0825 at 820.349 kb on + strand, within Synpcc7942_0825 at 820.463 kb on + strand, within Synpcc7942_0825 at 820.623 kb on + strand at 820.623 kb on + strand at 820.647 kb on - strand at 820.671 kb on - strand at 820.701 kb on - strand at 820.731 kb on + strand at 820.748 kb on + strand at 820.752 kb on + strand at 820.797 kb on + strand, within Synpcc7942_0826 at 820.797 kb on + strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.833 kb on - strand, within Synpcc7942_0826 at 820.859 kb on + strand, within Synpcc7942_0826 at 820.868 kb on - strand, within Synpcc7942_0826 at 820.883 kb on + strand, within Synpcc7942_0826 at 820.883 kb on + strand, within Synpcc7942_0826 at 820.900 kb on + strand, within Synpcc7942_0826 at 820.908 kb on + strand, within Synpcc7942_0826 at 820.922 kb on + strand, within Synpcc7942_0826 at 820.933 kb on + strand, within Synpcc7942_0826 at 820.943 kb on - strand, within Synpcc7942_0826 at 820.959 kb on - strand, within Synpcc7942_0826 at 820.961 kb on + strand, within Synpcc7942_0826 at 820.978 kb on + strand, within Synpcc7942_0826 at 820.986 kb on - strand, within Synpcc7942_0826 at 820.986 kb on - strand, within Synpcc7942_0826 at 820.988 kb on + strand, within Synpcc7942_0826 at 820.990 kb on - strand, within Synpcc7942_0826 at 820.996 kb on - strand, within Synpcc7942_0826 at 821.038 kb on + strand, within Synpcc7942_0826 at 821.307 kb on + strand, within Synpcc7942_0826 at 821.315 kb on - strand, within Synpcc7942_0826 at 821.451 kb on + strand, within Synpcc7942_0826 at 821.456 kb on + strand, within Synpcc7942_0826 at 821.457 kb on + strand, within Synpcc7942_0826 at 821.457 kb on + strand, within Synpcc7942_0826 at 821.461 kb on + strand, within Synpcc7942_0826 at 821.464 kb on - strand, within Synpcc7942_0826 at 821.465 kb on - strand, within Synpcc7942_0826 at 821.631 kb on - strand at 821.665 kb on - strand at 821.667 kb on + strand at 821.715 kb on + strand at 821.770 kb on + strand at 821.788 kb on - strand at 821.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Flasks with Spin rep 1 remove 819,708 + Synpcc7942_0824 0.89 +0.1 819,761 - -2.1 819,792 + +1.6 819,800 - +1.6 819,818 + +0.6 819,818 + -1.3 820,229 - Synpcc7942_0825 0.39 +0.0 820,349 + Synpcc7942_0825 0.56 +1.6 820,463 + Synpcc7942_0825 0.73 +1.6 820,623 + +1.6 820,623 + +0.0 820,647 - +1.6 820,671 - +1.6 820,701 - -1.3 820,731 + +1.6 820,748 + +0.0 820,752 + -1.0 820,797 + Synpcc7942_0826 0.11 +1.6 820,797 + Synpcc7942_0826 0.11 +2.2 820,805 - Synpcc7942_0826 0.12 -1.0 820,805 - Synpcc7942_0826 0.12 -2.0 820,805 - Synpcc7942_0826 0.12 +1.6 820,833 - Synpcc7942_0826 0.15 +1.6 820,859 + Synpcc7942_0826 0.18 -0.6 820,868 - Synpcc7942_0826 0.19 +1.4 820,883 + Synpcc7942_0826 0.20 -2.9 820,883 + Synpcc7942_0826 0.20 +0.6 820,900 + Synpcc7942_0826 0.22 -0.7 820,908 + Synpcc7942_0826 0.23 +2.0 820,922 + Synpcc7942_0826 0.24 +1.6 820,933 + Synpcc7942_0826 0.26 -3.8 820,943 - Synpcc7942_0826 0.27 -1.6 820,959 - Synpcc7942_0826 0.28 -1.2 820,961 + Synpcc7942_0826 0.29 -1.4 820,978 + Synpcc7942_0826 0.30 +1.6 820,986 - Synpcc7942_0826 0.31 -1.4 820,986 - Synpcc7942_0826 0.31 -3.0 820,988 + Synpcc7942_0826 0.32 -1.1 820,990 - Synpcc7942_0826 0.32 +1.6 820,996 - Synpcc7942_0826 0.32 -1.1 821,038 + Synpcc7942_0826 0.37 +1.6 821,307 + Synpcc7942_0826 0.66 +1.6 821,315 - Synpcc7942_0826 0.66 -2.5 821,451 + Synpcc7942_0826 0.81 +1.6 821,456 + Synpcc7942_0826 0.82 +0.0 821,457 + Synpcc7942_0826 0.82 -0.7 821,457 + Synpcc7942_0826 0.82 +2.6 821,461 + Synpcc7942_0826 0.82 -1.8 821,464 - Synpcc7942_0826 0.82 +0.9 821,465 - Synpcc7942_0826 0.82 -0.7 821,631 - +0.6 821,665 - -1.2 821,667 + +1.0 821,715 + +1.6 821,770 + -1.3 821,788 - -2.3 821,815 - +1.0
Or see this region's nucleotide sequence