Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0726

Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0725 and Synpcc7942_0726 overlap by 8 nucleotidesSynpcc7942_0726 and Synpcc7942_0727 overlap by 8 nucleotides Synpcc7942_0725: Synpcc7942_0725 - DEAD/DEAH box helicase-like, at 718,666 to 720,075 _0725 Synpcc7942_0726: Synpcc7942_0726 - hypothetical protein, at 720,068 to 720,430 _0726 Synpcc7942_0727: Synpcc7942_0727 - hypothetical protein, at 720,423 to 722,966 _0727 Position (kb) 720 721Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 719.072 kb on - strand, within Synpcc7942_0725at 719.083 kb on - strand, within Synpcc7942_0725at 719.090 kb on + strand, within Synpcc7942_0725at 719.090 kb on + strand, within Synpcc7942_0725at 719.090 kb on + strand, within Synpcc7942_0725at 719.090 kb on + strand, within Synpcc7942_0725at 719.098 kb on - strand, within Synpcc7942_0725at 719.102 kb on + strand, within Synpcc7942_0725at 719.110 kb on + strand, within Synpcc7942_0725at 719.110 kb on - strand, within Synpcc7942_0725at 719.110 kb on - strand, within Synpcc7942_0725at 719.134 kb on - strand, within Synpcc7942_0725at 719.134 kb on - strand, within Synpcc7942_0725at 719.164 kb on + strand, within Synpcc7942_0725at 719.182 kb on - strand, within Synpcc7942_0725at 719.182 kb on - strand, within Synpcc7942_0725at 719.188 kb on + strand, within Synpcc7942_0725at 719.188 kb on + strand, within Synpcc7942_0725at 719.229 kb on + strand, within Synpcc7942_0725at 719.247 kb on - strand, within Synpcc7942_0725at 719.273 kb on + strand, within Synpcc7942_0725at 719.274 kb on + strand, within Synpcc7942_0725at 719.280 kb on + strand, within Synpcc7942_0725at 719.280 kb on + strand, within Synpcc7942_0725at 719.289 kb on + strand, within Synpcc7942_0725at 719.295 kb on + strand, within Synpcc7942_0725at 719.346 kb on + strand, within Synpcc7942_0725at 719.346 kb on + strand, within Synpcc7942_0725at 719.346 kb on + strand, within Synpcc7942_0725at 719.346 kb on + strand, within Synpcc7942_0725at 719.357 kb on - strand, within Synpcc7942_0725at 719.357 kb on - strand, within Synpcc7942_0725at 719.359 kb on - strand, within Synpcc7942_0725at 719.395 kb on + strand, within Synpcc7942_0725at 719.420 kb on + strand, within Synpcc7942_0725at 719.436 kb on - strand, within Synpcc7942_0725at 719.437 kb on - strand, within Synpcc7942_0725at 719.493 kb on + strand, within Synpcc7942_0725at 719.507 kb on + strand, within Synpcc7942_0725at 719.561 kb on - strand, within Synpcc7942_0725at 719.588 kb on + strand, within Synpcc7942_0725at 719.609 kb on + strand, within Synpcc7942_0725at 719.609 kb on + strand, within Synpcc7942_0725at 719.609 kb on + strand, within Synpcc7942_0725at 719.609 kb on + strand, within Synpcc7942_0725at 719.609 kb on + strand, within Synpcc7942_0725at 719.609 kb on + strand, within Synpcc7942_0725at 719.617 kb on - strand, within Synpcc7942_0725at 719.617 kb on - strand, within Synpcc7942_0725at 719.617 kb on - strand, within Synpcc7942_0725at 719.617 kb on - strand, within Synpcc7942_0725at 719.617 kb on - strand, within Synpcc7942_0725at 719.619 kb on + strand, within Synpcc7942_0725at 719.639 kb on - strand, within Synpcc7942_0725at 719.639 kb on - strand, within Synpcc7942_0725at 719.641 kb on + strand, within Synpcc7942_0725at 719.642 kb on + strand, within Synpcc7942_0725at 719.642 kb on + strand, within Synpcc7942_0725at 719.650 kb on - strand, within Synpcc7942_0725at 719.650 kb on - strand, within Synpcc7942_0725at 719.652 kb on - strand, within Synpcc7942_0725at 719.660 kb on + strand, within Synpcc7942_0725at 719.660 kb on - strand, within Synpcc7942_0725at 719.664 kb on + strand, within Synpcc7942_0725at 719.692 kb on + strand, within Synpcc7942_0725at 719.692 kb on + strand, within Synpcc7942_0725at 719.699 kb on + strand, within Synpcc7942_0725at 719.749 kb on - strand, within Synpcc7942_0725at 719.758 kb on + strand, within Synpcc7942_0725at 719.766 kb on - strand, within Synpcc7942_0725at 719.766 kb on - strand, within Synpcc7942_0725at 719.775 kb on + strand, within Synpcc7942_0725at 719.793 kb on - strand, within Synpcc7942_0725at 719.810 kb on - strand, within Synpcc7942_0725at 719.826 kb on + strand, within Synpcc7942_0725at 719.833 kb on + strand, within Synpcc7942_0725at 719.850 kb on + strand, within Synpcc7942_0725at 719.873 kb on + strand, within Synpcc7942_0725at 719.873 kb on + strand, within Synpcc7942_0725at 719.873 kb on + strand, within Synpcc7942_0725at 719.873 kb on + strand, within Synpcc7942_0725at 719.873 kb on + strand, within Synpcc7942_0725at 719.881 kb on - strand, within Synpcc7942_0725at 719.881 kb on - strand, within Synpcc7942_0725at 719.881 kb on - strand, within Synpcc7942_0725at 719.881 kb on - strand, within Synpcc7942_0725at 719.881 kb on - strand, within Synpcc7942_0725at 719.881 kb on - strand, within Synpcc7942_0725at 719.881 kb on - strand, within Synpcc7942_0725at 719.883 kb on + strand, within Synpcc7942_0725at 719.883 kb on + strand, within Synpcc7942_0725at 719.883 kb on + strand, within Synpcc7942_0725at 719.883 kb on + strand, within Synpcc7942_0725at 719.883 kb on + strand, within Synpcc7942_0725at 719.891 kb on - strand, within Synpcc7942_0725at 719.891 kb on - strand, within Synpcc7942_0725at 719.891 kb on - strand, within Synpcc7942_0725at 719.891 kb on - strand, within Synpcc7942_0725at 719.941 kb on + strandat 719.951 kb on + strandat 719.952 kb on + strandat 719.953 kb on + strandat 719.953 kb on + strandat 719.953 kb on + strandat 719.954 kb on - strandat 719.961 kb on - strandat 719.961 kb on - strandat 719.996 kb on + strandat 720.011 kb on + strandat 720.021 kb on + strandat 720.047 kb on - strandat 720.052 kb on - strandat 720.059 kb on + strandat 720.064 kb on + strandat 720.100 kb on + strandat 720.100 kb on + strandat 720.108 kb on - strand, within Synpcc7942_0726at 720.131 kb on - strand, within Synpcc7942_0726at 720.160 kb on + strand, within Synpcc7942_0726at 720.168 kb on - strand, within Synpcc7942_0726at 720.171 kb on + strand, within Synpcc7942_0726at 720.189 kb on + strand, within Synpcc7942_0726at 720.189 kb on + strand, within Synpcc7942_0726at 720.189 kb on + strand, within Synpcc7942_0726at 720.189 kb on + strand, within Synpcc7942_0726at 720.197 kb on - strand, within Synpcc7942_0726at 720.197 kb on - strand, within Synpcc7942_0726at 720.209 kb on - strand, within Synpcc7942_0726at 720.209 kb on - strand, within Synpcc7942_0726at 720.209 kb on - strand, within Synpcc7942_0726at 720.209 kb on - strand, within Synpcc7942_0726at 720.210 kb on + strand, within Synpcc7942_0726at 720.210 kb on + strand, within Synpcc7942_0726at 720.218 kb on - strand, within Synpcc7942_0726at 720.218 kb on - strand, within Synpcc7942_0726at 720.246 kb on + strand, within Synpcc7942_0726at 720.452 kb on - strandat 720.464 kb on + strandat 720.546 kb on + strandat 720.565 kb on - strandat 720.588 kb on + strandat 720.598 kb on + strandat 720.623 kb on + strandat 720.650 kb on - strandat 720.670 kb on - strandat 720.679 kb on + strand, within Synpcc7942_0727at 720.688 kb on + strand, within Synpcc7942_0727at 720.699 kb on + strand, within Synpcc7942_0727at 720.767 kb on + strandat 720.825 kb on + strand, within Synpcc7942_0727at 720.898 kb on - strand, within Synpcc7942_0727at 720.904 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.905 kb on + strand, within Synpcc7942_0727at 720.913 kb on - strandat 720.913 kb on - strand, within Synpcc7942_0727at 720.913 kb on - strand, within Synpcc7942_0727at 720.913 kb on - strand, within Synpcc7942_0727at 720.913 kb on - strand, within Synpcc7942_0727at 720.913 kb on - strand, within Synpcc7942_0727at 720.939 kb on + strand, within Synpcc7942_0727at 721.007 kb on - strand, within Synpcc7942_0727at 721.007 kb on - strand, within Synpcc7942_0727at 721.044 kb on + strand, within Synpcc7942_0727at 721.051 kb on - strand, within Synpcc7942_0727at 721.052 kb on - strand, within Synpcc7942_0727at 721.052 kb on - strand, within Synpcc7942_0727at 721.052 kb on - strand, within Synpcc7942_0727at 721.052 kb on - strand, within Synpcc7942_0727at 721.132 kb on + strand, within Synpcc7942_0727at 721.140 kb on - strand, within Synpcc7942_0727at 721.156 kb on + strand, within Synpcc7942_0727at 721.157 kb on + strand, within Synpcc7942_0727at 721.164 kb on - strand, within Synpcc7942_0727at 721.166 kb on - strand, within Synpcc7942_0727at 721.192 kb on + strand, within Synpcc7942_0727at 721.215 kb on + strand, within Synpcc7942_0727at 721.215 kb on + strand, within Synpcc7942_0727at 721.215 kb on + strand, within Synpcc7942_0727at 721.215 kb on + strand, within Synpcc7942_0727at 721.233 kb on - strand, within Synpcc7942_0727at 721.312 kb on + strand, within Synpcc7942_0727at 721.312 kb on + strand, within Synpcc7942_0727at 721.333 kb on + strand, within Synpcc7942_0727at 721.341 kb on - strand, within Synpcc7942_0727at 721.341 kb on - strand, within Synpcc7942_0727at 721.341 kb on - strand, within Synpcc7942_0727at 721.341 kb on - strand, within Synpcc7942_0727at 721.341 kb on - strand, within Synpcc7942_0727at 721.341 kb on - strand, within Synpcc7942_0727at 721.341 kb on - strand, within Synpcc7942_0727at 721.341 kb on - strand, within Synpcc7942_0727at 721.370 kb on + strand, within Synpcc7942_0727at 721.370 kb on + strand, within Synpcc7942_0727at 721.370 kb on + strand, within Synpcc7942_0727at 721.388 kb on - strand, within Synpcc7942_0727at 721.396 kb on + strand, within Synpcc7942_0727at 721.403 kb on + strand, within Synpcc7942_0727at 721.415 kb on + strand, within Synpcc7942_0727at 721.415 kb on + strand, within Synpcc7942_0727at 721.423 kb on + strand, within Synpcc7942_0727

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Flasks with Spin rep 1
remove
719,072 - Synpcc7942_0725 0.29 -0.7
719,083 - Synpcc7942_0725 0.30 -1.7
719,090 + Synpcc7942_0725 0.30 -2.7
719,090 + Synpcc7942_0725 0.30 +2.2
719,090 + Synpcc7942_0725 0.30 -1.5
719,090 + Synpcc7942_0725 0.30 +1.6
719,098 - Synpcc7942_0725 0.31 +0.4
719,102 + Synpcc7942_0725 0.31 -0.7
719,110 + Synpcc7942_0725 0.31 -2.3
719,110 - Synpcc7942_0725 0.31 -1.8
719,110 - Synpcc7942_0725 0.31 +2.8
719,134 - Synpcc7942_0725 0.33 -0.4
719,134 - Synpcc7942_0725 0.33 +0.0
719,164 + Synpcc7942_0725 0.35 -1.1
719,182 - Synpcc7942_0725 0.37 -0.3
719,182 - Synpcc7942_0725 0.37 -0.7
719,188 + Synpcc7942_0725 0.37 +0.0
719,188 + Synpcc7942_0725 0.37 +0.0
719,229 + Synpcc7942_0725 0.40 +1.6
719,247 - Synpcc7942_0725 0.41 +0.6
719,273 + Synpcc7942_0725 0.43 +0.6
719,274 + Synpcc7942_0725 0.43 +2.3
719,280 + Synpcc7942_0725 0.44 +3.2
719,280 + Synpcc7942_0725 0.44 -0.7
719,289 + Synpcc7942_0725 0.44 -0.6
719,295 + Synpcc7942_0725 0.45 +0.3
719,346 + Synpcc7942_0725 0.48 +0.5
719,346 + Synpcc7942_0725 0.48 +0.0
719,346 + Synpcc7942_0725 0.48 -0.7
719,346 + Synpcc7942_0725 0.48 -2.1
719,357 - Synpcc7942_0725 0.49 +1.9
719,357 - Synpcc7942_0725 0.49 +2.6
719,359 - Synpcc7942_0725 0.49 +1.4
719,395 + Synpcc7942_0725 0.52 +1.8
719,420 + Synpcc7942_0725 0.53 +2.6
719,436 - Synpcc7942_0725 0.55 -1.6
719,437 - Synpcc7942_0725 0.55 +1.6
719,493 + Synpcc7942_0725 0.59 +1.6
719,507 + Synpcc7942_0725 0.60 -0.4
719,561 - Synpcc7942_0725 0.63 -2.0
719,588 + Synpcc7942_0725 0.65 -1.7
719,609 + Synpcc7942_0725 0.67 -0.6
719,609 + Synpcc7942_0725 0.67 +1.6
719,609 + Synpcc7942_0725 0.67 +2.2
719,609 + Synpcc7942_0725 0.67 -0.9
719,609 + Synpcc7942_0725 0.67 +0.0
719,609 + Synpcc7942_0725 0.67 -1.4
719,617 - Synpcc7942_0725 0.67 -1.4
719,617 - Synpcc7942_0725 0.67 +0.6
719,617 - Synpcc7942_0725 0.67 +1.6
719,617 - Synpcc7942_0725 0.67 -0.3
719,617 - Synpcc7942_0725 0.67 -0.4
719,619 + Synpcc7942_0725 0.68 -1.7
719,639 - Synpcc7942_0725 0.69 -0.4
719,639 - Synpcc7942_0725 0.69 -2.0
719,641 + Synpcc7942_0725 0.69 +1.6
719,642 + Synpcc7942_0725 0.69 +2.2
719,642 + Synpcc7942_0725 0.69 +2.0
719,650 - Synpcc7942_0725 0.70 +0.3
719,650 - Synpcc7942_0725 0.70 -0.4
719,652 - Synpcc7942_0725 0.70 +1.6
719,660 + Synpcc7942_0725 0.70 -1.5
719,660 - Synpcc7942_0725 0.70 -1.9
719,664 + Synpcc7942_0725 0.71 +0.0
719,692 + Synpcc7942_0725 0.73 -1.0
719,692 + Synpcc7942_0725 0.73 -2.1
719,699 + Synpcc7942_0725 0.73 -0.1
719,749 - Synpcc7942_0725 0.77 +2.3
719,758 + Synpcc7942_0725 0.77 -1.2
719,766 - Synpcc7942_0725 0.78 +1.6
719,766 - Synpcc7942_0725 0.78 +3.4
719,775 + Synpcc7942_0725 0.79 -0.9
719,793 - Synpcc7942_0725 0.80 -1.0
719,810 - Synpcc7942_0725 0.81 -0.9
719,826 + Synpcc7942_0725 0.82 +0.3
719,833 + Synpcc7942_0725 0.83 +0.6
719,850 + Synpcc7942_0725 0.84 +1.6
719,873 + Synpcc7942_0725 0.86 -0.7
719,873 + Synpcc7942_0725 0.86 -1.5
719,873 + Synpcc7942_0725 0.86 +0.0
719,873 + Synpcc7942_0725 0.86 +1.6
719,873 + Synpcc7942_0725 0.86 -0.8
719,881 - Synpcc7942_0725 0.86 -1.2
719,881 - Synpcc7942_0725 0.86 +1.3
719,881 - Synpcc7942_0725 0.86 +0.7
719,881 - Synpcc7942_0725 0.86 -0.9
719,881 - Synpcc7942_0725 0.86 -0.7
719,881 - Synpcc7942_0725 0.86 +1.6
719,881 - Synpcc7942_0725 0.86 -0.7
719,883 + Synpcc7942_0725 0.86 -1.3
719,883 + Synpcc7942_0725 0.86 +0.6
719,883 + Synpcc7942_0725 0.86 -0.7
719,883 + Synpcc7942_0725 0.86 -0.5
719,883 + Synpcc7942_0725 0.86 +0.8
719,891 - Synpcc7942_0725 0.87 +1.6
719,891 - Synpcc7942_0725 0.87 +0.6
719,891 - Synpcc7942_0725 0.87 +0.6
719,891 - Synpcc7942_0725 0.87 -0.2
719,941 + -0.4
719,951 + -3.0
719,952 + -0.1
719,953 + -2.3
719,953 + -1.0
719,953 + +1.6
719,954 - +0.6
719,961 - +1.6
719,961 - +4.4
719,996 + +3.6
720,011 + -0.8
720,021 + -0.4
720,047 - +0.0
720,052 - -0.7
720,059 + -0.8
720,064 + +0.6
720,100 + -0.7
720,100 + +0.6
720,108 - Synpcc7942_0726 0.11 +1.6
720,131 - Synpcc7942_0726 0.17 -1.6
720,160 + Synpcc7942_0726 0.25 +0.0
720,168 - Synpcc7942_0726 0.28 -1.5
720,171 + Synpcc7942_0726 0.28 +3.2
720,189 + Synpcc7942_0726 0.33 -1.9
720,189 + Synpcc7942_0726 0.33 -0.9
720,189 + Synpcc7942_0726 0.33 -1.5
720,189 + Synpcc7942_0726 0.33 -0.9
720,197 - Synpcc7942_0726 0.36 +1.1
720,197 - Synpcc7942_0726 0.36 -3.1
720,209 - Synpcc7942_0726 0.39 +1.6
720,209 - Synpcc7942_0726 0.39 +0.6
720,209 - Synpcc7942_0726 0.39 +0.6
720,209 - Synpcc7942_0726 0.39 -3.7
720,210 + Synpcc7942_0726 0.39 -0.3
720,210 + Synpcc7942_0726 0.39 +1.6
720,218 - Synpcc7942_0726 0.41 -0.2
720,218 - Synpcc7942_0726 0.41 -1.9
720,246 + Synpcc7942_0726 0.49 +0.0
720,452 - +0.6
720,464 + -3.8
720,546 + -2.7
720,565 - +0.6
720,588 + +1.6
720,598 + +2.6
720,623 + -1.0
720,650 - +3.0
720,670 - +1.6
720,679 + Synpcc7942_0727 0.10 +0.9
720,688 + Synpcc7942_0727 0.10 +0.4
720,699 + Synpcc7942_0727 0.11 +0.3
720,767 + +0.2
720,825 + Synpcc7942_0727 0.16 +0.0
720,898 - Synpcc7942_0727 0.19 -0.4
720,904 + Synpcc7942_0727 0.19 +1.6
720,905 + Synpcc7942_0727 0.19 +1.6
720,905 + Synpcc7942_0727 0.19 +1.6
720,905 + Synpcc7942_0727 0.19 -1.3
720,905 + Synpcc7942_0727 0.19 +1.6
720,905 + Synpcc7942_0727 0.19 -1.2
720,905 + Synpcc7942_0727 0.19 -1.0
720,905 + Synpcc7942_0727 0.19 -2.7
720,905 + Synpcc7942_0727 0.19 +0.6
720,905 + Synpcc7942_0727 0.19 +1.6
720,905 + Synpcc7942_0727 0.19 +1.6
720,913 - -0.7
720,913 - Synpcc7942_0727 0.19 -2.1
720,913 - Synpcc7942_0727 0.19 +0.6
720,913 - Synpcc7942_0727 0.19 -2.0
720,913 - Synpcc7942_0727 0.19 +0.0
720,913 - Synpcc7942_0727 0.19 +2.6
720,939 + Synpcc7942_0727 0.20 +0.5
721,007 - Synpcc7942_0727 0.23 -1.8
721,007 - Synpcc7942_0727 0.23 -1.0
721,044 + Synpcc7942_0727 0.24 +1.6
721,051 - Synpcc7942_0727 0.25 +2.0
721,052 - Synpcc7942_0727 0.25 +0.3
721,052 - Synpcc7942_0727 0.25 -1.8
721,052 - Synpcc7942_0727 0.25 -1.4
721,052 - Synpcc7942_0727 0.25 -1.2
721,132 + Synpcc7942_0727 0.28 -0.7
721,140 - Synpcc7942_0727 0.28 -1.1
721,156 + Synpcc7942_0727 0.29 -2.2
721,157 + Synpcc7942_0727 0.29 -0.4
721,164 - Synpcc7942_0727 0.29 -1.2
721,166 - Synpcc7942_0727 0.29 -0.4
721,192 + Synpcc7942_0727 0.30 -1.6
721,215 + Synpcc7942_0727 0.31 -3.2
721,215 + Synpcc7942_0727 0.31 +1.0
721,215 + Synpcc7942_0727 0.31 +1.6
721,215 + Synpcc7942_0727 0.31 +1.5
721,233 - Synpcc7942_0727 0.32 +0.6
721,312 + Synpcc7942_0727 0.35 +2.6
721,312 + Synpcc7942_0727 0.35 -1.2
721,333 + Synpcc7942_0727 0.36 -2.4
721,341 - Synpcc7942_0727 0.36 +1.4
721,341 - Synpcc7942_0727 0.36 -1.9
721,341 - Synpcc7942_0727 0.36 -1.6
721,341 - Synpcc7942_0727 0.36 -0.8
721,341 - Synpcc7942_0727 0.36 +0.4
721,341 - Synpcc7942_0727 0.36 -1.8
721,341 - Synpcc7942_0727 0.36 -1.0
721,341 - Synpcc7942_0727 0.36 -2.4
721,370 + Synpcc7942_0727 0.37 -0.4
721,370 + Synpcc7942_0727 0.37 -1.1
721,370 + Synpcc7942_0727 0.37 -2.5
721,388 - Synpcc7942_0727 0.38 -1.2
721,396 + Synpcc7942_0727 0.38 +1.6
721,403 + Synpcc7942_0727 0.39 -0.2
721,415 + Synpcc7942_0727 0.39 -0.2
721,415 + Synpcc7942_0727 0.39 -2.1
721,423 + Synpcc7942_0727 0.39 +0.3

Or see this region's nucleotide sequence