Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0719 and Synpcc7942_0720 are separated by 219 nucleotides Synpcc7942_0720 and Synpcc7942_0721 are separated by 202 nucleotides Synpcc7942_0721 and Synpcc7942_0722 are separated by 60 nucleotides
Synpcc7942_0719: Synpcc7942_0719 - hypothetical protein, at 714,328 to 714,831
_0719
Synpcc7942_0720: Synpcc7942_0720 - hypothetical protein, at 715,051 to 715,389
_0720
Synpcc7942_0721: Synpcc7942_0721 - hypothetical protein, at 715,592 to 715,882
_0721
Synpcc7942_0722: Synpcc7942_0722 - hypothetical protein, at 715,943 to 717,025
_0722
Position (kb) 715
716 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 714.671 kb on + strand, within Synpcc7942_0719 at 714.718 kb on + strand, within Synpcc7942_0719 at 714.746 kb on + strand, within Synpcc7942_0719 at 714.762 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.773 kb on + strand, within Synpcc7942_0719 at 714.778 kb on + strand, within Synpcc7942_0719 at 714.781 kb on - strand at 714.781 kb on - strand at 714.781 kb on - strand at 714.783 kb on + strand at 714.790 kb on + strand at 714.793 kb on - strand at 714.798 kb on - strand at 714.803 kb on - strand at 714.831 kb on + strand at 714.831 kb on + strand at 714.839 kb on - strand at 714.839 kb on - strand at 714.841 kb on + strand at 714.844 kb on + strand at 714.849 kb on + strand at 714.880 kb on - strand at 714.880 kb on - strand at 714.882 kb on + strand at 714.889 kb on - strand at 714.904 kb on + strand at 714.910 kb on + strand at 714.912 kb on - strand at 714.912 kb on - strand at 714.915 kb on + strand at 714.918 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.925 kb on + strand at 714.930 kb on + strand at 714.933 kb on - strand at 714.938 kb on - strand at 714.948 kb on - strand at 714.977 kb on - strand at 714.979 kb on - strand at 714.995 kb on - strand at 715.006 kb on + strand at 715.007 kb on + strand at 715.018 kb on + strand at 715.040 kb on - strand at 715.056 kb on + strand at 715.064 kb on - strand at 715.064 kb on - strand at 715.068 kb on + strand at 715.125 kb on + strand, within Synpcc7942_0720 at 715.194 kb on + strand, within Synpcc7942_0720 at 715.196 kb on - strand at 715.202 kb on - strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.274 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.384 kb on + strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.401 kb on + strand at 715.401 kb on + strand at 715.431 kb on + strand at 715.442 kb on + strand at 715.442 kb on + strand at 715.449 kb on + strand at 715.449 kb on + strand at 715.457 kb on - strand at 715.464 kb on + strand at 715.464 kb on + strand at 715.467 kb on - strand at 715.470 kb on + strand at 715.472 kb on - strand at 715.495 kb on - strand at 715.544 kb on - strand at 715.571 kb on + strand at 715.598 kb on - strand at 715.603 kb on - strand at 715.607 kb on + strand at 715.607 kb on + strand at 715.615 kb on - strand at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.635 kb on + strand, within Synpcc7942_0721 at 715.668 kb on + strand, within Synpcc7942_0721 at 715.679 kb on - strand, within Synpcc7942_0721 at 715.681 kb on - strand, within Synpcc7942_0721 at 715.686 kb on - strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.723 kb on + strand, within Synpcc7942_0721 at 715.725 kb on - strand, within Synpcc7942_0721 at 715.801 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.815 kb on + strand, within Synpcc7942_0721 at 715.829 kb on + strand, within Synpcc7942_0721 at 715.943 kb on - strand at 715.943 kb on - strand at 715.943 kb on - strand at 715.969 kb on + strand at 715.999 kb on + strand at 716.004 kb on + strand at 716.004 kb on + strand at 716.011 kb on - strand at 716.071 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.101 kb on + strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.116 kb on + strand, within Synpcc7942_0722 at 716.124 kb on - strand, within Synpcc7942_0722 at 716.149 kb on - strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.159 kb on - strand, within Synpcc7942_0722 at 716.184 kb on - strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.221 kb on + strand, within Synpcc7942_0722 at 716.230 kb on + strand, within Synpcc7942_0722 at 716.236 kb on + strand, within Synpcc7942_0722 at 716.284 kb on + strand, within Synpcc7942_0722 at 716.289 kb on + strand at 716.301 kb on + strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.341 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.358 kb on + strand, within Synpcc7942_0722 at 716.374 kb on - strand, within Synpcc7942_0722 at 716.378 kb on + strand, within Synpcc7942_0722 at 716.378 kb on - strand, within Synpcc7942_0722 at 716.386 kb on - strand, within Synpcc7942_0722 at 716.387 kb on - strand, within Synpcc7942_0722 at 716.394 kb on - strand, within Synpcc7942_0722 at 716.397 kb on - strand, within Synpcc7942_0722 at 716.421 kb on - strand, within Synpcc7942_0722 at 716.421 kb on - strand at 716.430 kb on - strand at 716.448 kb on + strand, within Synpcc7942_0722 at 716.473 kb on - strand, within Synpcc7942_0722 at 716.475 kb on + strand, within Synpcc7942_0722 at 716.480 kb on + strand, within Synpcc7942_0722 at 716.480 kb on + strand, within Synpcc7942_0722 at 716.483 kb on - strand, within Synpcc7942_0722 at 716.532 kb on + strand, within Synpcc7942_0722 at 716.532 kb on + strand, within Synpcc7942_0722 at 716.532 kb on + strand at 716.532 kb on + strand, within Synpcc7942_0722 at 716.545 kb on - strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.583 kb on + strand, within Synpcc7942_0722 at 716.597 kb on - strand, within Synpcc7942_0722 at 716.607 kb on - strand, within Synpcc7942_0722 at 716.616 kb on + strand, within Synpcc7942_0722 at 716.635 kb on - strand, within Synpcc7942_0722 at 716.677 kb on - strand, within Synpcc7942_0722 at 716.687 kb on - strand, within Synpcc7942_0722 at 716.702 kb on - strand, within Synpcc7942_0722 at 716.707 kb on - strand, within Synpcc7942_0722 at 716.722 kb on - strand, within Synpcc7942_0722 at 716.729 kb on - strand, within Synpcc7942_0722 at 716.729 kb on - strand, within Synpcc7942_0722 at 716.764 kb on - strand, within Synpcc7942_0722 at 716.800 kb on + strand, within Synpcc7942_0722 at 716.808 kb on - strand, within Synpcc7942_0722 at 716.810 kb on - strand, within Synpcc7942_0722 at 716.823 kb on - strand, within Synpcc7942_0722 at 716.836 kb on + strand, within Synpcc7942_0722 at 716.854 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.868 kb on - strand, within Synpcc7942_0722 at 716.879 kb on - strand, within Synpcc7942_0722
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Flasks with Spin rep 1 remove 714,671 + Synpcc7942_0719 0.68 -0.2 714,718 + Synpcc7942_0719 0.77 +1.6 714,746 + Synpcc7942_0719 0.83 +2.2 714,762 + Synpcc7942_0719 0.86 -1.1 714,763 + Synpcc7942_0719 0.86 +2.0 714,763 + Synpcc7942_0719 0.86 +2.3 714,771 - Synpcc7942_0719 0.88 -2.5 714,771 - Synpcc7942_0719 0.88 -0.6 714,773 + Synpcc7942_0719 0.88 -1.0 714,778 + Synpcc7942_0719 0.89 -0.3 714,781 - -1.9 714,781 - +0.6 714,781 - -0.9 714,783 + -0.4 714,790 + -1.5 714,793 - -2.4 714,798 - +0.6 714,803 - +2.2 714,831 + +2.6 714,831 + -0.2 714,839 - +1.2 714,839 - -0.1 714,841 + +1.6 714,844 + -0.9 714,849 + +1.6 714,880 - -0.2 714,880 - -1.6 714,882 + -1.5 714,889 - -1.3 714,904 + +3.4 714,910 + -0.7 714,912 - -0.2 714,912 - -1.4 714,915 + +2.6 714,918 - -0.1 714,923 - +1.2 714,923 - -1.0 714,923 - +0.0 714,923 - +0.3 714,925 + -2.4 714,930 + -0.7 714,933 - +0.6 714,938 - +2.6 714,948 - -0.4 714,977 - +0.4 714,979 - -0.4 714,995 - -0.4 715,006 + -0.2 715,007 + -1.5 715,018 + -0.7 715,040 - -1.1 715,056 + -1.6 715,064 - -3.5 715,064 - -1.4 715,068 + +0.4 715,125 + Synpcc7942_0720 0.22 +0.2 715,194 + Synpcc7942_0720 0.42 +1.6 715,196 - -1.7 715,202 - Synpcc7942_0720 0.45 -0.7 715,257 + Synpcc7942_0720 0.61 +0.0 715,257 + Synpcc7942_0720 0.61 +3.3 715,274 + Synpcc7942_0720 0.66 +1.6 715,284 + Synpcc7942_0720 0.69 -1.1 715,284 + Synpcc7942_0720 0.69 -0.9 715,384 + -1.9 715,392 - +1.0 715,392 - +0.9 715,392 - +1.5 715,392 - -1.7 715,401 + -1.4 715,401 + -1.1 715,431 + +0.6 715,442 + -3.5 715,442 + -2.1 715,449 + -1.2 715,449 + -1.2 715,457 - -1.9 715,464 + +0.8 715,464 + -1.3 715,467 - -0.2 715,470 + +0.9 715,472 - +0.1 715,495 - +2.3 715,544 - +1.6 715,571 + +2.0 715,598 - +1.6 715,603 - -2.6 715,607 + +1.6 715,607 + +1.6 715,615 - +0.6 715,630 - Synpcc7942_0721 0.13 +0.0 715,630 - Synpcc7942_0721 0.13 -0.5 715,630 - Synpcc7942_0721 0.13 +0.3 715,635 + Synpcc7942_0721 0.15 -0.7 715,668 + Synpcc7942_0721 0.26 +1.6 715,679 - Synpcc7942_0721 0.30 -1.2 715,681 - Synpcc7942_0721 0.31 -1.6 715,686 - Synpcc7942_0721 0.32 +1.6 715,689 + Synpcc7942_0721 0.33 +1.6 715,689 + Synpcc7942_0721 0.33 +0.6 715,723 + Synpcc7942_0721 0.45 -1.3 715,725 - Synpcc7942_0721 0.46 -1.0 715,801 + Synpcc7942_0721 0.72 +0.8 715,806 + Synpcc7942_0721 0.74 -1.6 715,806 + Synpcc7942_0721 0.74 +1.6 715,815 + Synpcc7942_0721 0.77 -1.5 715,829 + Synpcc7942_0721 0.81 -1.0 715,943 - +0.6 715,943 - +0.6 715,943 - -0.7 715,969 + -0.7 715,999 + -0.9 716,004 + -1.4 716,004 + -1.7 716,011 - -1.6 716,071 + Synpcc7942_0722 0.12 +1.6 716,082 + Synpcc7942_0722 0.13 -0.4 716,082 + Synpcc7942_0722 0.13 -1.0 716,089 - Synpcc7942_0722 0.13 -1.9 716,089 - Synpcc7942_0722 0.13 +1.6 716,089 - Synpcc7942_0722 0.13 +0.0 716,090 - Synpcc7942_0722 0.14 +1.6 716,090 - Synpcc7942_0722 0.14 +1.6 716,101 + Synpcc7942_0722 0.15 -1.7 716,109 - Synpcc7942_0722 0.15 +1.6 716,109 - Synpcc7942_0722 0.15 +0.6 716,116 + Synpcc7942_0722 0.16 +0.6 716,124 - Synpcc7942_0722 0.17 -2.4 716,149 - Synpcc7942_0722 0.19 -1.0 716,151 + Synpcc7942_0722 0.19 -0.6 716,151 + Synpcc7942_0722 0.19 -1.1 716,159 - Synpcc7942_0722 0.20 +0.0 716,184 - Synpcc7942_0722 0.22 +1.6 716,220 + Synpcc7942_0722 0.26 -1.1 716,220 + Synpcc7942_0722 0.26 -0.7 716,221 + Synpcc7942_0722 0.26 +0.0 716,230 + Synpcc7942_0722 0.27 +1.6 716,236 + Synpcc7942_0722 0.27 +0.1 716,284 + Synpcc7942_0722 0.31 +1.6 716,289 + -0.4 716,301 + Synpcc7942_0722 0.33 +1.6 716,309 - Synpcc7942_0722 0.34 +1.6 716,309 - Synpcc7942_0722 0.34 -0.5 716,309 - Synpcc7942_0722 0.34 +0.1 716,309 - Synpcc7942_0722 0.34 +2.6 716,341 + Synpcc7942_0722 0.37 +1.6 716,356 + Synpcc7942_0722 0.38 -0.1 716,356 + Synpcc7942_0722 0.38 -0.2 716,358 + Synpcc7942_0722 0.38 -0.2 716,374 - Synpcc7942_0722 0.40 +0.0 716,378 + Synpcc7942_0722 0.40 -0.3 716,378 - Synpcc7942_0722 0.40 -1.6 716,386 - Synpcc7942_0722 0.41 -0.4 716,387 - Synpcc7942_0722 0.41 -4.0 716,394 - Synpcc7942_0722 0.42 -0.2 716,397 - Synpcc7942_0722 0.42 -2.0 716,421 - Synpcc7942_0722 0.44 -1.0 716,421 - +0.6 716,430 - -1.6 716,448 + Synpcc7942_0722 0.47 +0.2 716,473 - Synpcc7942_0722 0.49 +1.6 716,475 + Synpcc7942_0722 0.49 +0.6 716,480 + Synpcc7942_0722 0.50 -2.4 716,480 + Synpcc7942_0722 0.50 -1.3 716,483 - Synpcc7942_0722 0.50 +0.3 716,532 + Synpcc7942_0722 0.54 -0.7 716,532 + Synpcc7942_0722 0.54 -1.1 716,532 + +0.6 716,532 + Synpcc7942_0722 0.54 -2.1 716,545 - Synpcc7942_0722 0.56 -0.8 716,566 + Synpcc7942_0722 0.58 +0.0 716,566 + Synpcc7942_0722 0.58 +1.2 716,566 + Synpcc7942_0722 0.58 +1.6 716,566 + Synpcc7942_0722 0.58 -2.7 716,566 + Synpcc7942_0722 0.58 +0.6 716,574 - Synpcc7942_0722 0.58 -0.7 716,574 - Synpcc7942_0722 0.58 -0.3 716,574 - Synpcc7942_0722 0.58 +0.3 716,583 + Synpcc7942_0722 0.59 -1.3 716,597 - Synpcc7942_0722 0.60 -0.9 716,607 - Synpcc7942_0722 0.61 -1.0 716,616 + Synpcc7942_0722 0.62 +0.6 716,635 - Synpcc7942_0722 0.64 -0.2 716,677 - Synpcc7942_0722 0.68 -1.0 716,687 - Synpcc7942_0722 0.69 -1.6 716,702 - Synpcc7942_0722 0.70 +0.0 716,707 - Synpcc7942_0722 0.71 +1.6 716,722 - Synpcc7942_0722 0.72 -0.7 716,729 - Synpcc7942_0722 0.73 -1.4 716,729 - Synpcc7942_0722 0.73 +3.9 716,764 - Synpcc7942_0722 0.76 -0.4 716,800 + Synpcc7942_0722 0.79 +1.6 716,808 - Synpcc7942_0722 0.80 -1.7 716,810 - Synpcc7942_0722 0.80 +3.3 716,823 - Synpcc7942_0722 0.81 +1.0 716,836 + Synpcc7942_0722 0.82 -0.6 716,854 + Synpcc7942_0722 0.84 -1.4 716,860 + Synpcc7942_0722 0.85 +1.0 716,860 + Synpcc7942_0722 0.85 +0.0 716,860 + Synpcc7942_0722 0.85 -2.2 716,868 - Synpcc7942_0722 0.85 -0.4 716,879 - Synpcc7942_0722 0.86 -1.1
Or see this region's nucleotide sequence