Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0252

Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0250 and Synpcc7942_0251 are separated by 3 nucleotidesSynpcc7942_0251 and cp12 are separated by 28 nucleotidescp12 and Synpcc7942_0253 are separated by 34 nucleotidesSynpcc7942_0253 and gyrA are separated by 229 nucleotides Synpcc7942_0250: Synpcc7942_0250 - hypothetical protein, at 246,639 to 247,106 _0250 Synpcc7942_0251: Synpcc7942_0251 - Exonuclease, at 247,110 to 247,880 _0251 Synpcc7942_0252: cp12 - hypothetical protein, at 247,909 to 248,136 cp12 Synpcc7942_0253: Synpcc7942_0253 - hypothetical protein, at 248,171 to 248,629 _0253 Synpcc7942_0254: gyrA - DNA gyrase subunit A, at 248,859 to 251,429 gyrA Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 246.913 kb on + strand, within Synpcc7942_0250at 246.918 kb on + strand, within Synpcc7942_0250at 246.921 kb on - strand, within Synpcc7942_0250at 246.926 kb on - strand, within Synpcc7942_0250at 246.926 kb on - strand, within Synpcc7942_0250at 247.055 kb on - strand, within Synpcc7942_0250at 247.055 kb on - strandat 247.096 kb on + strandat 247.112 kb on + strandat 247.117 kb on + strandat 247.125 kb on - strandat 247.125 kb on - strandat 247.137 kb on - strandat 247.156 kb on + strandat 247.156 kb on + strandat 247.164 kb on - strandat 247.210 kb on - strand, within Synpcc7942_0251at 247.210 kb on - strand, within Synpcc7942_0251at 247.230 kb on - strand, within Synpcc7942_0251at 247.238 kb on - strand, within Synpcc7942_0251at 247.264 kb on - strand, within Synpcc7942_0251at 247.280 kb on + strand, within Synpcc7942_0251at 247.289 kb on + strand, within Synpcc7942_0251at 247.336 kb on - strand, within Synpcc7942_0251at 247.378 kb on - strand, within Synpcc7942_0251at 247.380 kb on + strand, within Synpcc7942_0251at 247.383 kb on - strand, within Synpcc7942_0251at 247.388 kb on - strand, within Synpcc7942_0251at 247.417 kb on + strand, within Synpcc7942_0251at 247.439 kb on - strand, within Synpcc7942_0251at 247.451 kb on + strand, within Synpcc7942_0251at 247.451 kb on + strand, within Synpcc7942_0251at 247.451 kb on + strand, within Synpcc7942_0251at 247.459 kb on - strand, within Synpcc7942_0251at 247.492 kb on + strand, within Synpcc7942_0251at 247.496 kb on + strand, within Synpcc7942_0251at 247.506 kb on - strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.511 kb on + strand, within Synpcc7942_0251at 247.512 kb on - strand, within Synpcc7942_0251at 247.519 kb on - strand, within Synpcc7942_0251at 247.519 kb on - strandat 247.519 kb on - strand, within Synpcc7942_0251at 247.519 kb on - strand, within Synpcc7942_0251at 247.521 kb on + strand, within Synpcc7942_0251at 247.521 kb on + strand, within Synpcc7942_0251at 247.529 kb on - strand, within Synpcc7942_0251at 247.539 kb on + strand, within Synpcc7942_0251at 247.541 kb on - strand, within Synpcc7942_0251at 247.568 kb on + strand, within Synpcc7942_0251at 247.602 kb on + strand, within Synpcc7942_0251at 247.639 kb on + strand, within Synpcc7942_0251at 247.654 kb on - strand, within Synpcc7942_0251at 247.655 kb on - strand, within Synpcc7942_0251at 247.655 kb on - strand, within Synpcc7942_0251at 247.664 kb on - strand, within Synpcc7942_0251at 247.671 kb on + strand, within Synpcc7942_0251at 247.671 kb on + strand, within Synpcc7942_0251at 247.671 kb on + strand, within Synpcc7942_0251at 247.679 kb on - strand, within Synpcc7942_0251at 247.691 kb on + strand, within Synpcc7942_0251at 247.703 kb on - strand, within Synpcc7942_0251at 247.715 kb on + strand, within Synpcc7942_0251at 247.730 kb on + strand, within Synpcc7942_0251at 247.738 kb on + strand, within Synpcc7942_0251at 247.746 kb on + strand, within Synpcc7942_0251at 247.746 kb on - strand, within Synpcc7942_0251at 247.746 kb on - strand, within Synpcc7942_0251at 247.746 kb on - strandat 247.751 kb on + strand, within Synpcc7942_0251at 247.789 kb on - strand, within Synpcc7942_0251at 247.847 kb on + strandat 247.852 kb on + strandat 247.855 kb on - strandat 247.858 kb on + strandat 247.868 kb on + strandat 247.868 kb on + strandat 247.868 kb on + strandat 247.873 kb on + strandat 247.881 kb on - strandat 247.906 kb on + strandat 247.914 kb on - strandat 247.942 kb on + strand, within cp12at 248.010 kb on - strand, within cp12at 248.014 kb on - strand, within cp12at 248.034 kb on + strand, within cp12at 248.040 kb on - strand, within cp12at 248.050 kb on - strandat 248.080 kb on + strand, within cp12at 248.096 kb on - strand, within cp12at 248.103 kb on + strand, within cp12at 248.109 kb on - strand, within cp12at 248.124 kb on - strandat 248.126 kb on - strandat 248.126 kb on - strandat 248.132 kb on - strandat 248.132 kb on - strandat 248.133 kb on - strandat 248.133 kb on - strandat 248.163 kb on - strandat 248.222 kb on - strand, within Synpcc7942_0253at 248.243 kb on - strand, within Synpcc7942_0253at 248.243 kb on - strand, within Synpcc7942_0253at 248.254 kb on - strand, within Synpcc7942_0253at 248.263 kb on + strand, within Synpcc7942_0253at 248.286 kb on - strand, within Synpcc7942_0253at 248.296 kb on - strand, within Synpcc7942_0253at 248.312 kb on + strandat 248.312 kb on + strand, within Synpcc7942_0253at 248.362 kb on + strand, within Synpcc7942_0253at 248.372 kb on + strand, within Synpcc7942_0253at 248.375 kb on - strand, within Synpcc7942_0253at 248.375 kb on - strand, within Synpcc7942_0253at 248.434 kb on - strand, within Synpcc7942_0253at 248.439 kb on - strandat 248.439 kb on - strand, within Synpcc7942_0253at 248.439 kb on - strand, within Synpcc7942_0253at 248.454 kb on + strand, within Synpcc7942_0253at 248.459 kb on + strand, within Synpcc7942_0253at 248.466 kb on + strand, within Synpcc7942_0253at 248.508 kb on + strand, within Synpcc7942_0253at 248.530 kb on + strand, within Synpcc7942_0253at 248.543 kb on + strand, within Synpcc7942_0253at 248.548 kb on + strand, within Synpcc7942_0253at 248.551 kb on - strand, within Synpcc7942_0253at 248.556 kb on - strand, within Synpcc7942_0253at 248.561 kb on - strand, within Synpcc7942_0253at 248.590 kb on - strandat 248.633 kb on - strandat 248.711 kb on + strandat 248.711 kb on + strandat 248.719 kb on - strandat 248.725 kb on - strandat 248.739 kb on - strandat 248.849 kb on + strandat 248.861 kb on - strandat 248.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Flasks with Spin rep 1
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246,913 + Synpcc7942_0250 0.59 +1.0
246,918 + Synpcc7942_0250 0.60 -0.4
246,921 - Synpcc7942_0250 0.60 +0.1
246,926 - Synpcc7942_0250 0.61 +1.9
246,926 - Synpcc7942_0250 0.61 -1.2
247,055 - Synpcc7942_0250 0.89 -0.9
247,055 - -1.0
247,096 + +0.8
247,112 + -0.2
247,117 + +1.9
247,125 - -1.6
247,125 - -1.5
247,137 - +0.6
247,156 + +3.2
247,156 + +1.0
247,164 - +0.6
247,210 - Synpcc7942_0251 0.13 -1.4
247,210 - Synpcc7942_0251 0.13 -0.2
247,230 - Synpcc7942_0251 0.16 +1.6
247,238 - Synpcc7942_0251 0.17 -0.1
247,264 - Synpcc7942_0251 0.20 -0.5
247,280 + Synpcc7942_0251 0.22 +0.0
247,289 + Synpcc7942_0251 0.23 +2.0
247,336 - Synpcc7942_0251 0.29 +4.2
247,378 - Synpcc7942_0251 0.35 -3.0
247,380 + Synpcc7942_0251 0.35 +0.6
247,383 - Synpcc7942_0251 0.35 -0.2
247,388 - Synpcc7942_0251 0.36 -2.6
247,417 + Synpcc7942_0251 0.40 +1.6
247,439 - Synpcc7942_0251 0.43 -1.4
247,451 + Synpcc7942_0251 0.44 +1.6
247,451 + Synpcc7942_0251 0.44 +0.7
247,451 + Synpcc7942_0251 0.44 +1.0
247,459 - Synpcc7942_0251 0.45 +2.0
247,492 + Synpcc7942_0251 0.50 -2.6
247,496 + Synpcc7942_0251 0.50 -1.2
247,506 - Synpcc7942_0251 0.51 +0.8
247,511 + Synpcc7942_0251 0.52 +0.3
247,511 + Synpcc7942_0251 0.52 -0.5
247,511 + Synpcc7942_0251 0.52 +0.6
247,511 + Synpcc7942_0251 0.52 -1.8
247,511 + Synpcc7942_0251 0.52 +4.6
247,511 + Synpcc7942_0251 0.52 -0.1
247,511 + Synpcc7942_0251 0.52 +1.6
247,511 + Synpcc7942_0251 0.52 -1.6
247,511 + Synpcc7942_0251 0.52 -0.7
247,512 - Synpcc7942_0251 0.52 -0.7
247,519 - Synpcc7942_0251 0.53 -1.4
247,519 - +0.4
247,519 - Synpcc7942_0251 0.53 +1.6
247,519 - Synpcc7942_0251 0.53 +0.0
247,521 + Synpcc7942_0251 0.53 -1.3
247,521 + Synpcc7942_0251 0.53 -1.3
247,529 - Synpcc7942_0251 0.54 -0.7
247,539 + Synpcc7942_0251 0.56 -1.6
247,541 - Synpcc7942_0251 0.56 +0.4
247,568 + Synpcc7942_0251 0.59 +1.0
247,602 + Synpcc7942_0251 0.64 +0.9
247,639 + Synpcc7942_0251 0.69 +0.2
247,654 - Synpcc7942_0251 0.71 -0.7
247,655 - Synpcc7942_0251 0.71 +1.0
247,655 - Synpcc7942_0251 0.71 -0.4
247,664 - Synpcc7942_0251 0.72 -0.2
247,671 + Synpcc7942_0251 0.73 +0.6
247,671 + Synpcc7942_0251 0.73 -0.7
247,671 + Synpcc7942_0251 0.73 -0.3
247,679 - Synpcc7942_0251 0.74 +1.6
247,691 + Synpcc7942_0251 0.75 +3.4
247,703 - Synpcc7942_0251 0.77 +0.0
247,715 + Synpcc7942_0251 0.78 -0.3
247,730 + Synpcc7942_0251 0.80 -0.1
247,738 + Synpcc7942_0251 0.81 -0.7
247,746 + Synpcc7942_0251 0.82 +2.5
247,746 - Synpcc7942_0251 0.82 +1.6
247,746 - Synpcc7942_0251 0.82 -1.9
247,746 - +0.0
247,751 + Synpcc7942_0251 0.83 -1.5
247,789 - Synpcc7942_0251 0.88 +1.6
247,847 + -1.0
247,852 + -1.8
247,855 - +2.2
247,858 + -1.2
247,868 + +0.5
247,868 + -1.4
247,868 + -1.4
247,873 + -1.6
247,881 - -1.7
247,906 + +1.9
247,914 - -0.9
247,942 + cp12 Synpcc7942_0252 0.14 +0.0
248,010 - cp12 Synpcc7942_0252 0.44 -0.6
248,014 - cp12 Synpcc7942_0252 0.46 -1.4
248,034 + cp12 Synpcc7942_0252 0.55 -0.4
248,040 - cp12 Synpcc7942_0252 0.57 -1.3
248,050 - +0.0
248,080 + cp12 Synpcc7942_0252 0.75 -0.8
248,096 - cp12 Synpcc7942_0252 0.82 -1.1
248,103 + cp12 Synpcc7942_0252 0.85 +1.0
248,109 - cp12 Synpcc7942_0252 0.88 -1.9
248,124 - -1.3
248,126 - -1.0
248,126 - -1.8
248,132 - +2.6
248,132 - -1.7
248,133 - +1.6
248,133 - +0.1
248,163 - -1.4
248,222 - Synpcc7942_0253 0.11 -0.7
248,243 - Synpcc7942_0253 0.16 +0.0
248,243 - Synpcc7942_0253 0.16 -1.6
248,254 - Synpcc7942_0253 0.18 -0.4
248,263 + Synpcc7942_0253 0.20 +1.2
248,286 - Synpcc7942_0253 0.25 +1.3
248,296 - Synpcc7942_0253 0.27 -1.3
248,312 + +0.0
248,312 + Synpcc7942_0253 0.31 +0.6
248,362 + Synpcc7942_0253 0.42 -0.3
248,372 + Synpcc7942_0253 0.44 -1.0
248,375 - Synpcc7942_0253 0.44 +0.7
248,375 - Synpcc7942_0253 0.44 -1.5
248,434 - Synpcc7942_0253 0.57 -1.2
248,439 - -0.8
248,439 - Synpcc7942_0253 0.58 -1.0
248,439 - Synpcc7942_0253 0.58 +2.4
248,454 + Synpcc7942_0253 0.62 +1.8
248,459 + Synpcc7942_0253 0.63 -1.6
248,466 + Synpcc7942_0253 0.64 +0.3
248,508 + Synpcc7942_0253 0.73 -1.3
248,530 + Synpcc7942_0253 0.78 +1.2
248,543 + Synpcc7942_0253 0.81 -2.7
248,548 + Synpcc7942_0253 0.82 -1.9
248,551 - Synpcc7942_0253 0.83 -0.1
248,556 - Synpcc7942_0253 0.84 -0.4
248,561 - Synpcc7942_0253 0.85 +1.6
248,590 - -1.1
248,633 - +0.5
248,711 + +0.6
248,711 + -1.2
248,719 - +1.3
248,725 - -2.7
248,739 - +0.0
248,849 + +2.6
248,861 - -0.7
248,863 - -1.7

Or see this region's nucleotide sequence