Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0163 and Synpcc7942_0164 are separated by 37 nucleotides Synpcc7942_0164 and ycf36 are separated by 18 nucleotides ycf36 and Synpcc7942_0166 overlap by 4 nucleotides
Synpcc7942_0163: Synpcc7942_0163 - hypothetical protein, at 163,761 to 164,510
_0163
Synpcc7942_0164: Synpcc7942_0164 - Iojap-related protein, at 164,548 to 164,967
_0164
Synpcc7942_0165: ycf36 - hypothetical protein, at 164,986 to 165,486
ycf36
Synpcc7942_0166: Synpcc7942_0166 - hypothetical protein, at 165,483 to 166,436
_0166
Position (kb) 164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 164.028 kb on - strand, within Synpcc7942_0163 at 164.050 kb on + strand, within Synpcc7942_0163 at 164.052 kb on + strand, within Synpcc7942_0163 at 164.069 kb on + strand, within Synpcc7942_0163 at 164.076 kb on - strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.105 kb on - strand, within Synpcc7942_0163 at 164.121 kb on + strand, within Synpcc7942_0163 at 164.148 kb on + strand, within Synpcc7942_0163 at 164.148 kb on + strand, within Synpcc7942_0163 at 164.153 kb on - strand, within Synpcc7942_0163 at 164.219 kb on + strand, within Synpcc7942_0163 at 164.227 kb on + strand, within Synpcc7942_0163 at 164.236 kb on + strand, within Synpcc7942_0163 at 164.298 kb on + strand, within Synpcc7942_0163 at 164.298 kb on + strand, within Synpcc7942_0163 at 164.305 kb on + strand, within Synpcc7942_0163 at 164.306 kb on - strand, within Synpcc7942_0163 at 164.344 kb on + strand, within Synpcc7942_0163 at 164.385 kb on - strand, within Synpcc7942_0163 at 164.390 kb on + strand, within Synpcc7942_0163 at 164.418 kb on + strand, within Synpcc7942_0163 at 164.426 kb on - strand, within Synpcc7942_0163 at 164.476 kb on + strand at 164.484 kb on - strand at 164.497 kb on - strand at 164.499 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.510 kb on + strand at 164.513 kb on - strand at 164.517 kb on + strand at 164.525 kb on - strand at 164.551 kb on + strand at 164.551 kb on + strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.598 kb on + strand, within Synpcc7942_0164 at 164.598 kb on + strand, within Synpcc7942_0164 at 164.601 kb on - strand, within Synpcc7942_0164 at 164.607 kb on - strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.676 kb on + strand, within Synpcc7942_0164 at 164.795 kb on + strand, within Synpcc7942_0164 at 164.803 kb on - strand, within Synpcc7942_0164 at 164.816 kb on + strand, within Synpcc7942_0164 at 164.824 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand at 164.832 kb on - strand, within Synpcc7942_0164 at 164.914 kb on - strand, within Synpcc7942_0164 at 164.939 kb on + strand at 164.954 kb on + strand at 164.994 kb on + strand at 165.029 kb on - strand at 165.035 kb on + strand at 165.051 kb on - strand, within ycf36 at 165.069 kb on + strand, within ycf36 at 165.072 kb on - strand, within ycf36 at 165.090 kb on - strand at 165.090 kb on - strand, within ycf36 at 165.093 kb on + strand, within ycf36 at 165.096 kb on - strand, within ycf36 at 165.098 kb on + strand, within ycf36 at 165.100 kb on - strand, within ycf36 at 165.105 kb on + strand, within ycf36 at 165.113 kb on + strand, within ycf36 at 165.113 kb on - strand, within ycf36 at 165.118 kb on + strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.137 kb on - strand, within ycf36 at 165.142 kb on - strand, within ycf36 at 165.178 kb on + strand, within ycf36 at 165.179 kb on + strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.195 kb on + strand, within ycf36 at 165.209 kb on + strand, within ycf36 at 165.254 kb on - strand, within ycf36 at 165.288 kb on + strand, within ycf36 at 165.296 kb on - strand, within ycf36 at 165.312 kb on - strand, within ycf36 at 165.367 kb on + strand, within ycf36 at 165.452 kb on - strand at 165.468 kb on + strand at 165.508 kb on - strand at 165.593 kb on - strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.618 kb on + strand, within Synpcc7942_0166 at 165.634 kb on - strand, within Synpcc7942_0166 at 165.655 kb on - strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.674 kb on + strand, within Synpcc7942_0166 at 165.688 kb on - strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.705 kb on - strand, within Synpcc7942_0166 at 165.820 kb on + strand, within Synpcc7942_0166 at 165.834 kb on - strand, within Synpcc7942_0166 at 165.839 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on - strand, within Synpcc7942_0166 at 165.855 kb on - strand, within Synpcc7942_0166 at 165.860 kb on - strand, within Synpcc7942_0166 at 165.892 kb on + strand, within Synpcc7942_0166 at 165.905 kb on + strand, within Synpcc7942_0166 at 166.021 kb on + strand, within Synpcc7942_0166 at 166.029 kb on + strand, within Synpcc7942_0166 at 166.067 kb on + strand, within Synpcc7942_0166 at 166.075 kb on - strand, within Synpcc7942_0166 at 166.087 kb on - strand, within Synpcc7942_0166 at 166.104 kb on - strand, within Synpcc7942_0166 at 166.121 kb on + strand, within Synpcc7942_0166 at 166.157 kb on + strand, within Synpcc7942_0166 at 166.173 kb on + strand, within Synpcc7942_0166 at 166.184 kb on + strand, within Synpcc7942_0166 at 166.227 kb on + strand, within Synpcc7942_0166 at 166.247 kb on - strand, within Synpcc7942_0166 at 166.252 kb on - strand, within Synpcc7942_0166 at 166.254 kb on + strand, within Synpcc7942_0166 at 166.274 kb on + strand, within Synpcc7942_0166 at 166.369 kb on - strand at 166.376 kb on + strand at 166.383 kb on + strand at 166.384 kb on + strand at 166.419 kb on + strand at 166.425 kb on + strand at 166.427 kb on - strand at 166.433 kb on - strand at 166.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Flasks with Spin rep 1 remove 164,028 - Synpcc7942_0163 0.36 -0.7 164,050 + Synpcc7942_0163 0.39 +2.5 164,052 + Synpcc7942_0163 0.39 -0.7 164,069 + Synpcc7942_0163 0.41 -1.5 164,076 - Synpcc7942_0163 0.42 +3.1 164,085 + Synpcc7942_0163 0.43 -0.4 164,085 + Synpcc7942_0163 0.43 +0.5 164,085 + Synpcc7942_0163 0.43 -0.3 164,097 + Synpcc7942_0163 0.45 -1.8 164,097 + Synpcc7942_0163 0.45 +3.8 164,097 + Synpcc7942_0163 0.45 -0.8 164,105 - Synpcc7942_0163 0.46 -0.0 164,121 + Synpcc7942_0163 0.48 -2.0 164,148 + Synpcc7942_0163 0.52 -1.1 164,148 + Synpcc7942_0163 0.52 -0.7 164,153 - Synpcc7942_0163 0.52 -0.1 164,219 + Synpcc7942_0163 0.61 -1.7 164,227 + Synpcc7942_0163 0.62 +0.8 164,236 + Synpcc7942_0163 0.63 -0.3 164,298 + Synpcc7942_0163 0.72 -1.7 164,298 + Synpcc7942_0163 0.72 -2.8 164,305 + Synpcc7942_0163 0.73 -2.8 164,306 - Synpcc7942_0163 0.73 -1.5 164,344 + Synpcc7942_0163 0.78 -1.9 164,385 - Synpcc7942_0163 0.83 -0.3 164,390 + Synpcc7942_0163 0.84 -1.6 164,418 + Synpcc7942_0163 0.88 +2.0 164,426 - Synpcc7942_0163 0.89 -0.8 164,476 + +2.1 164,484 - -1.3 164,497 - -0.3 164,499 + -0.5 164,500 + -2.9 164,500 + +2.3 164,500 + +0.3 164,500 + -1.8 164,500 + -1.6 164,500 + -4.2 164,508 - -0.7 164,508 - -0.8 164,508 - +0.4 164,510 + +0.1 164,513 - -1.6 164,517 + +2.1 164,525 - -1.0 164,551 + +2.5 164,551 + -0.9 164,559 - -1.8 164,559 - +0.5 164,559 - +1.9 164,598 + Synpcc7942_0164 0.12 -0.8 164,598 + Synpcc7942_0164 0.12 -1.8 164,601 - Synpcc7942_0164 0.13 -2.8 164,607 - Synpcc7942_0164 0.14 +0.7 164,666 + Synpcc7942_0164 0.28 +0.5 164,666 + Synpcc7942_0164 0.28 -1.3 164,666 + Synpcc7942_0164 0.28 -2.4 164,674 - Synpcc7942_0164 0.30 +0.5 164,674 - Synpcc7942_0164 0.30 +1.5 164,676 + Synpcc7942_0164 0.30 -0.8 164,795 + Synpcc7942_0164 0.59 -1.8 164,803 - Synpcc7942_0164 0.61 -2.2 164,816 + Synpcc7942_0164 0.64 -0.7 164,824 - Synpcc7942_0164 0.66 -0.0 164,832 - Synpcc7942_0164 0.68 -2.0 164,832 - +1.5 164,832 - Synpcc7942_0164 0.68 -0.8 164,914 - Synpcc7942_0164 0.87 +0.1 164,939 + -1.8 164,954 + -1.7 164,994 + -1.3 165,029 - -2.0 165,035 + -1.2 165,051 - ycf36 Synpcc7942_0165 0.13 +1.5 165,069 + ycf36 Synpcc7942_0165 0.17 -1.6 165,072 - ycf36 Synpcc7942_0165 0.17 -2.5 165,090 - -0.3 165,090 - ycf36 Synpcc7942_0165 0.21 -0.8 165,093 + ycf36 Synpcc7942_0165 0.21 +0.5 165,096 - ycf36 Synpcc7942_0165 0.22 -0.8 165,098 + ycf36 Synpcc7942_0165 0.22 +2.1 165,100 - ycf36 Synpcc7942_0165 0.23 +1.0 165,105 + ycf36 Synpcc7942_0165 0.24 -2.1 165,113 + ycf36 Synpcc7942_0165 0.25 -0.9 165,113 - ycf36 Synpcc7942_0165 0.25 -1.2 165,118 + ycf36 Synpcc7942_0165 0.26 -0.0 165,126 - ycf36 Synpcc7942_0165 0.28 +1.1 165,126 - ycf36 Synpcc7942_0165 0.28 -3.1 165,126 - ycf36 Synpcc7942_0165 0.28 +0.5 165,137 - ycf36 Synpcc7942_0165 0.30 -3.1 165,142 - ycf36 Synpcc7942_0165 0.31 -2.0 165,178 + ycf36 Synpcc7942_0165 0.38 -0.5 165,179 + ycf36 Synpcc7942_0165 0.39 -0.8 165,186 - ycf36 Synpcc7942_0165 0.40 +2.5 165,186 - ycf36 Synpcc7942_0165 0.40 +0.2 165,186 - ycf36 Synpcc7942_0165 0.40 -1.5 165,195 + ycf36 Synpcc7942_0165 0.42 +0.5 165,209 + ycf36 Synpcc7942_0165 0.45 -2.7 165,254 - ycf36 Synpcc7942_0165 0.53 +0.5 165,288 + ycf36 Synpcc7942_0165 0.60 -0.7 165,296 - ycf36 Synpcc7942_0165 0.62 +0.6 165,312 - ycf36 Synpcc7942_0165 0.65 +2.5 165,367 + ycf36 Synpcc7942_0165 0.76 -0.7 165,452 - +1.3 165,468 + -1.8 165,508 - +0.2 165,593 - Synpcc7942_0166 0.12 +1.0 165,602 + Synpcc7942_0166 0.12 +1.5 165,602 + Synpcc7942_0166 0.12 +0.5 165,618 + Synpcc7942_0166 0.14 -0.9 165,634 - Synpcc7942_0166 0.16 +1.5 165,655 - Synpcc7942_0166 0.18 +1.5 165,662 + Synpcc7942_0166 0.19 +1.5 165,662 + Synpcc7942_0166 0.19 +0.5 165,674 + Synpcc7942_0166 0.20 -0.0 165,688 - Synpcc7942_0166 0.21 +1.5 165,697 + Synpcc7942_0166 0.22 -0.2 165,697 + Synpcc7942_0166 0.22 +1.5 165,705 - Synpcc7942_0166 0.23 +1.5 165,820 + Synpcc7942_0166 0.35 +1.5 165,834 - Synpcc7942_0166 0.37 +1.5 165,839 + Synpcc7942_0166 0.37 +0.5 165,846 + Synpcc7942_0166 0.38 +1.5 165,846 + Synpcc7942_0166 0.38 +0.5 165,852 + Synpcc7942_0166 0.39 -0.3 165,852 + Synpcc7942_0166 0.39 +1.5 165,852 + Synpcc7942_0166 0.39 +0.7 165,852 - Synpcc7942_0166 0.39 +1.5 165,855 - Synpcc7942_0166 0.39 +1.5 165,860 - Synpcc7942_0166 0.40 +2.5 165,892 + Synpcc7942_0166 0.43 +1.5 165,905 + Synpcc7942_0166 0.44 +1.5 166,021 + Synpcc7942_0166 0.56 +1.5 166,029 + Synpcc7942_0166 0.57 +0.5 166,067 + Synpcc7942_0166 0.61 +1.5 166,075 - Synpcc7942_0166 0.62 +1.5 166,087 - Synpcc7942_0166 0.63 +1.5 166,104 - Synpcc7942_0166 0.65 +1.5 166,121 + Synpcc7942_0166 0.67 +1.5 166,157 + Synpcc7942_0166 0.71 -0.0 166,173 + Synpcc7942_0166 0.72 +1.5 166,184 + Synpcc7942_0166 0.73 +1.5 166,227 + Synpcc7942_0166 0.78 +1.5 166,247 - Synpcc7942_0166 0.80 +1.5 166,252 - Synpcc7942_0166 0.81 +1.5 166,254 + Synpcc7942_0166 0.81 +1.5 166,274 + Synpcc7942_0166 0.83 -0.0 166,369 - +1.5 166,376 + +0.5 166,383 + +1.5 166,384 + +1.5 166,419 + -1.3 166,425 + +1.5 166,427 - -2.5 166,433 - -1.8 166,438 - -1.9
Or see this region's nucleotide sequence