Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0026

Experiment: Biofilm in WT Conditioned Media in Flasks with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0025 and Synpcc7942_0026 overlap by 41 nucleotidesSynpcc7942_0026 and bioF are separated by 124 nucleotides Synpcc7942_0025: Synpcc7942_0025 - hypothetical protein, at 25,416 to 27,122 _0025 Synpcc7942_0026: Synpcc7942_0026 - hypothetical protein, at 27,082 to 28,059 _0026 Synpcc7942_0027: bioF - 8-amino-7-oxononanoate synthase, at 28,184 to 29,350 bioF Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 26.101 kb on + strand, within Synpcc7942_0025at 26.113 kb on + strand, within Synpcc7942_0025at 26.126 kb on - strand, within Synpcc7942_0025at 26.126 kb on - strand, within Synpcc7942_0025at 26.137 kb on - strand, within Synpcc7942_0025at 26.137 kb on - strand, within Synpcc7942_0025at 26.147 kb on - strand, within Synpcc7942_0025at 26.159 kb on - strand, within Synpcc7942_0025at 26.170 kb on - strand, within Synpcc7942_0025at 26.201 kb on + strand, within Synpcc7942_0025at 26.209 kb on - strand, within Synpcc7942_0025at 26.220 kb on + strand, within Synpcc7942_0025at 26.228 kb on - strand, within Synpcc7942_0025at 26.228 kb on - strand, within Synpcc7942_0025at 26.248 kb on - strand, within Synpcc7942_0025at 26.305 kb on + strand, within Synpcc7942_0025at 26.311 kb on + strand, within Synpcc7942_0025at 26.313 kb on - strand, within Synpcc7942_0025at 26.325 kb on - strand, within Synpcc7942_0025at 26.334 kb on + strand, within Synpcc7942_0025at 26.376 kb on + strand, within Synpcc7942_0025at 26.397 kb on - strand, within Synpcc7942_0025at 26.406 kb on - strand, within Synpcc7942_0025at 26.417 kb on + strand, within Synpcc7942_0025at 26.418 kb on + strand, within Synpcc7942_0025at 26.425 kb on - strand, within Synpcc7942_0025at 26.463 kb on + strand, within Synpcc7942_0025at 26.507 kb on - strand, within Synpcc7942_0025at 26.507 kb on - strand, within Synpcc7942_0025at 26.529 kb on + strand, within Synpcc7942_0025at 26.529 kb on + strand, within Synpcc7942_0025at 26.548 kb on - strand, within Synpcc7942_0025at 26.575 kb on - strand, within Synpcc7942_0025at 26.585 kb on - strand, within Synpcc7942_0025at 26.595 kb on + strand, within Synpcc7942_0025at 26.597 kb on + strand, within Synpcc7942_0025at 26.597 kb on + strand, within Synpcc7942_0025at 26.597 kb on - strand, within Synpcc7942_0025at 26.602 kb on + strand, within Synpcc7942_0025at 26.605 kb on - strand, within Synpcc7942_0025at 26.605 kb on - strand, within Synpcc7942_0025at 26.632 kb on - strand, within Synpcc7942_0025at 26.640 kb on - strand, within Synpcc7942_0025at 26.656 kb on + strand, within Synpcc7942_0025at 26.664 kb on - strand, within Synpcc7942_0025at 26.669 kb on - strand, within Synpcc7942_0025at 26.690 kb on - strand, within Synpcc7942_0025at 26.720 kb on + strand, within Synpcc7942_0025at 26.726 kb on - strand, within Synpcc7942_0025at 26.736 kb on - strand, within Synpcc7942_0025at 26.740 kb on + strand, within Synpcc7942_0025at 26.740 kb on + strand, within Synpcc7942_0025at 26.750 kb on + strand, within Synpcc7942_0025at 26.760 kb on - strand, within Synpcc7942_0025at 26.798 kb on - strand, within Synpcc7942_0025at 26.809 kb on - strand, within Synpcc7942_0025at 26.810 kb on + strand, within Synpcc7942_0025at 26.818 kb on - strand, within Synpcc7942_0025at 26.826 kb on + strand, within Synpcc7942_0025at 26.834 kb on - strand, within Synpcc7942_0025at 26.847 kb on + strand, within Synpcc7942_0025at 26.876 kb on - strand, within Synpcc7942_0025at 26.894 kb on + strand, within Synpcc7942_0025at 26.895 kb on + strand, within Synpcc7942_0025at 26.903 kb on - strand, within Synpcc7942_0025at 26.925 kb on + strand, within Synpcc7942_0025at 26.930 kb on + strand, within Synpcc7942_0025at 26.930 kb on + strand, within Synpcc7942_0025at 26.938 kb on - strand, within Synpcc7942_0025at 26.944 kb on - strand, within Synpcc7942_0025at 26.970 kb on - strandat 26.972 kb on + strandat 26.980 kb on - strandat 26.980 kb on - strandat 26.980 kb on - strandat 26.984 kb on - strandat 26.988 kb on + strandat 27.006 kb on + strandat 27.012 kb on + strandat 27.042 kb on - strandat 27.051 kb on - strandat 27.072 kb on - strandat 27.077 kb on + strandat 27.111 kb on + strandat 27.116 kb on + strandat 27.116 kb on + strandat 27.119 kb on - strandat 27.144 kb on + strandat 27.144 kb on + strandat 27.144 kb on + strandat 27.144 kb on + strandat 27.152 kb on - strandat 27.152 kb on - strandat 27.163 kb on + strandat 27.176 kb on + strandat 27.181 kb on + strand, within Synpcc7942_0026at 27.184 kb on - strand, within Synpcc7942_0026at 27.187 kb on + strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.190 kb on - strand, within Synpcc7942_0026at 27.190 kb on - strand, within Synpcc7942_0026at 27.192 kb on + strand, within Synpcc7942_0026at 27.195 kb on - strand, within Synpcc7942_0026at 27.218 kb on + strandat 27.224 kb on + strand, within Synpcc7942_0026at 27.224 kb on + strand, within Synpcc7942_0026at 27.232 kb on - strand, within Synpcc7942_0026at 27.237 kb on + strand, within Synpcc7942_0026at 27.247 kb on + strand, within Synpcc7942_0026at 27.247 kb on + strand, within Synpcc7942_0026at 27.247 kb on + strand, within Synpcc7942_0026at 27.254 kb on - strand, within Synpcc7942_0026at 27.254 kb on - strand, within Synpcc7942_0026at 27.255 kb on - strand, within Synpcc7942_0026at 27.255 kb on - strand, within Synpcc7942_0026at 27.255 kb on - strand, within Synpcc7942_0026at 27.256 kb on + strandat 27.271 kb on - strand, within Synpcc7942_0026at 27.294 kb on - strand, within Synpcc7942_0026at 27.294 kb on - strand, within Synpcc7942_0026at 27.312 kb on - strand, within Synpcc7942_0026at 27.366 kb on + strand, within Synpcc7942_0026at 27.371 kb on + strand, within Synpcc7942_0026at 27.397 kb on + strand, within Synpcc7942_0026at 27.409 kb on + strand, within Synpcc7942_0026at 27.421 kb on + strand, within Synpcc7942_0026at 27.423 kb on - strand, within Synpcc7942_0026at 27.423 kb on - strandat 27.424 kb on - strand, within Synpcc7942_0026at 27.424 kb on - strand, within Synpcc7942_0026at 27.426 kb on + strand, within Synpcc7942_0026at 27.505 kb on - strand, within Synpcc7942_0026at 27.511 kb on + strand, within Synpcc7942_0026at 27.541 kb on + strand, within Synpcc7942_0026at 27.541 kb on + strand, within Synpcc7942_0026at 27.541 kb on + strand, within Synpcc7942_0026at 27.644 kb on - strand, within Synpcc7942_0026at 27.700 kb on + strand, within Synpcc7942_0026at 27.734 kb on + strand, within Synpcc7942_0026at 27.751 kb on + strand, within Synpcc7942_0026at 27.756 kb on - strand, within Synpcc7942_0026at 27.780 kb on + strand, within Synpcc7942_0026at 27.780 kb on + strand, within Synpcc7942_0026at 27.790 kb on + strand, within Synpcc7942_0026at 27.798 kb on - strand, within Synpcc7942_0026at 27.807 kb on + strand, within Synpcc7942_0026at 27.813 kb on + strand, within Synpcc7942_0026at 27.814 kb on + strand, within Synpcc7942_0026at 27.815 kb on - strand, within Synpcc7942_0026at 27.825 kb on + strand, within Synpcc7942_0026at 27.871 kb on + strand, within Synpcc7942_0026at 27.871 kb on + strand, within Synpcc7942_0026at 27.873 kb on + strand, within Synpcc7942_0026at 27.873 kb on + strand, within Synpcc7942_0026at 27.879 kb on - strand, within Synpcc7942_0026at 27.926 kb on + strand, within Synpcc7942_0026at 27.943 kb on + strand, within Synpcc7942_0026at 27.951 kb on - strand, within Synpcc7942_0026at 27.951 kb on - strand, within Synpcc7942_0026at 27.962 kb on + strandat 27.962 kb on + strandat 27.962 kb on + strandat 27.970 kb on - strandat 27.970 kb on - strandat 27.986 kb on + strandat 28.008 kb on - strandat 28.008 kb on - strandat 28.035 kb on + strandat 28.051 kb on + strandat 28.056 kb on + strandat 28.062 kb on - strandat 28.064 kb on - strandat 28.074 kb on - strandat 28.112 kb on + strandat 28.118 kb on - strandat 28.121 kb on + strandat 28.135 kb on + strandat 28.135 kb on + strandat 28.179 kb on + strandat 28.179 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Flasks with Spin rep 1
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26,101 + Synpcc7942_0025 0.40 +0.5
26,113 + Synpcc7942_0025 0.41 -0.6
26,126 - Synpcc7942_0025 0.42 +0.8
26,126 - Synpcc7942_0025 0.42 -1.0
26,137 - Synpcc7942_0025 0.42 -0.8
26,137 - Synpcc7942_0025 0.42 +2.1
26,147 - Synpcc7942_0025 0.43 +0.5
26,159 - Synpcc7942_0025 0.44 +1.2
26,170 - Synpcc7942_0025 0.44 -0.2
26,201 + Synpcc7942_0025 0.46 +1.5
26,209 - Synpcc7942_0025 0.46 -1.0
26,220 + Synpcc7942_0025 0.47 -1.9
26,228 - Synpcc7942_0025 0.48 -0.7
26,228 - Synpcc7942_0025 0.48 -0.0
26,248 - Synpcc7942_0025 0.49 +3.1
26,305 + Synpcc7942_0025 0.52 -0.9
26,311 + Synpcc7942_0025 0.52 +0.3
26,313 - Synpcc7942_0025 0.53 -1.4
26,325 - Synpcc7942_0025 0.53 -0.5
26,334 + Synpcc7942_0025 0.54 -0.6
26,376 + Synpcc7942_0025 0.56 +1.5
26,397 - Synpcc7942_0025 0.57 +3.9
26,406 - Synpcc7942_0025 0.58 +2.8
26,417 + Synpcc7942_0025 0.59 -1.3
26,418 + Synpcc7942_0025 0.59 +0.9
26,425 - Synpcc7942_0025 0.59 +0.3
26,463 + Synpcc7942_0025 0.61 +0.5
26,507 - Synpcc7942_0025 0.64 -2.5
26,507 - Synpcc7942_0025 0.64 +3.1
26,529 + Synpcc7942_0025 0.65 +2.5
26,529 + Synpcc7942_0025 0.65 -0.0
26,548 - Synpcc7942_0025 0.66 -0.4
26,575 - Synpcc7942_0025 0.68 -1.5
26,585 - Synpcc7942_0025 0.68 +0.7
26,595 + Synpcc7942_0025 0.69 +2.1
26,597 + Synpcc7942_0025 0.69 -0.5
26,597 + Synpcc7942_0025 0.69 +1.5
26,597 - Synpcc7942_0025 0.69 +1.5
26,602 + Synpcc7942_0025 0.69 +1.9
26,605 - Synpcc7942_0025 0.70 -1.5
26,605 - Synpcc7942_0025 0.70 -1.3
26,632 - Synpcc7942_0025 0.71 +1.5
26,640 - Synpcc7942_0025 0.72 +2.0
26,656 + Synpcc7942_0025 0.73 +3.5
26,664 - Synpcc7942_0025 0.73 -1.8
26,669 - Synpcc7942_0025 0.73 +0.5
26,690 - Synpcc7942_0025 0.75 -0.0
26,720 + Synpcc7942_0025 0.76 +2.5
26,726 - Synpcc7942_0025 0.77 +1.5
26,736 - Synpcc7942_0025 0.77 -1.5
26,740 + Synpcc7942_0025 0.78 -0.3
26,740 + Synpcc7942_0025 0.78 -2.2
26,750 + Synpcc7942_0025 0.78 +1.0
26,760 - Synpcc7942_0025 0.79 -0.5
26,798 - Synpcc7942_0025 0.81 -1.6
26,809 - Synpcc7942_0025 0.82 -2.4
26,810 + Synpcc7942_0025 0.82 +1.5
26,818 - Synpcc7942_0025 0.82 -0.3
26,826 + Synpcc7942_0025 0.83 +2.5
26,834 - Synpcc7942_0025 0.83 +3.0
26,847 + Synpcc7942_0025 0.84 -2.5
26,876 - Synpcc7942_0025 0.86 +1.0
26,894 + Synpcc7942_0025 0.87 -1.2
26,895 + Synpcc7942_0025 0.87 +1.0
26,903 - Synpcc7942_0025 0.87 -0.8
26,925 + Synpcc7942_0025 0.88 +1.5
26,930 + Synpcc7942_0025 0.89 -0.0
26,930 + Synpcc7942_0025 0.89 +1.1
26,938 - Synpcc7942_0025 0.89 -1.2
26,944 - Synpcc7942_0025 0.90 -1.5
26,970 - -0.3
26,972 + -2.0
26,980 - -0.6
26,980 - -0.0
26,980 - -1.8
26,984 - +3.1
26,988 + +2.7
27,006 + -1.3
27,012 + +0.5
27,042 - +2.3
27,051 - -0.0
27,072 - -0.5
27,077 + +3.7
27,111 + -1.6
27,116 + +1.0
27,116 + -2.1
27,119 - +1.7
27,144 + -0.4
27,144 + +2.5
27,144 + +0.5
27,144 + +2.4
27,152 - +2.1
27,152 - -0.0
27,163 + -0.8
27,176 + -2.1
27,181 + Synpcc7942_0026 0.10 +0.3
27,184 - Synpcc7942_0026 0.10 -1.0
27,187 + Synpcc7942_0026 0.11 -3.1
27,189 - Synpcc7942_0026 0.11 -1.5
27,189 - Synpcc7942_0026 0.11 +0.5
27,189 - Synpcc7942_0026 0.11 -1.5
27,189 - Synpcc7942_0026 0.11 -1.5
27,189 - Synpcc7942_0026 0.11 -1.3
27,190 - Synpcc7942_0026 0.11 +0.5
27,190 - Synpcc7942_0026 0.11 -2.6
27,192 + Synpcc7942_0026 0.11 +2.0
27,195 - Synpcc7942_0026 0.12 -1.1
27,218 + +0.5
27,224 + Synpcc7942_0026 0.15 -1.1
27,224 + Synpcc7942_0026 0.15 -0.7
27,232 - Synpcc7942_0026 0.15 -1.2
27,237 + Synpcc7942_0026 0.16 +0.1
27,247 + Synpcc7942_0026 0.17 +1.0
27,247 + Synpcc7942_0026 0.17 +1.9
27,247 + Synpcc7942_0026 0.17 +2.0
27,254 - Synpcc7942_0026 0.18 +0.3
27,254 - Synpcc7942_0026 0.18 -2.3
27,255 - Synpcc7942_0026 0.18 +0.5
27,255 - Synpcc7942_0026 0.18 -1.2
27,255 - Synpcc7942_0026 0.18 -2.5
27,256 + -2.0
27,271 - Synpcc7942_0026 0.19 -1.8
27,294 - Synpcc7942_0026 0.22 -0.8
27,294 - Synpcc7942_0026 0.22 +2.1
27,312 - Synpcc7942_0026 0.24 -1.3
27,366 + Synpcc7942_0026 0.29 -1.3
27,371 + Synpcc7942_0026 0.30 +0.4
27,397 + Synpcc7942_0026 0.32 -0.8
27,409 + Synpcc7942_0026 0.33 -2.6
27,421 + Synpcc7942_0026 0.35 +1.5
27,423 - Synpcc7942_0026 0.35 -0.0
27,423 - +0.5
27,424 - Synpcc7942_0026 0.35 +1.8
27,424 - Synpcc7942_0026 0.35 -1.8
27,426 + Synpcc7942_0026 0.35 -2.4
27,505 - Synpcc7942_0026 0.43 -1.5
27,511 + Synpcc7942_0026 0.44 +2.1
27,541 + Synpcc7942_0026 0.47 -2.3
27,541 + Synpcc7942_0026 0.47 +1.3
27,541 + Synpcc7942_0026 0.47 -0.8
27,644 - Synpcc7942_0026 0.57 -1.2
27,700 + Synpcc7942_0026 0.63 +1.5
27,734 + Synpcc7942_0026 0.67 +0.5
27,751 + Synpcc7942_0026 0.68 -0.6
27,756 - Synpcc7942_0026 0.69 -1.6
27,780 + Synpcc7942_0026 0.71 +3.1
27,780 + Synpcc7942_0026 0.71 -0.3
27,790 + Synpcc7942_0026 0.72 -2.9
27,798 - Synpcc7942_0026 0.73 +1.5
27,807 + Synpcc7942_0026 0.74 +0.5
27,813 + Synpcc7942_0026 0.75 -1.3
27,814 + Synpcc7942_0026 0.75 +0.5
27,815 - Synpcc7942_0026 0.75 +0.5
27,825 + Synpcc7942_0026 0.76 -0.9
27,871 + Synpcc7942_0026 0.81 -1.6
27,871 + Synpcc7942_0026 0.81 -2.4
27,873 + Synpcc7942_0026 0.81 +3.9
27,873 + Synpcc7942_0026 0.81 +0.9
27,879 - Synpcc7942_0026 0.81 -0.3
27,926 + Synpcc7942_0026 0.86 -1.3
27,943 + Synpcc7942_0026 0.88 -1.6
27,951 - Synpcc7942_0026 0.89 -0.1
27,951 - Synpcc7942_0026 0.89 -0.1
27,962 + -2.0
27,962 + +0.8
27,962 + +2.0
27,970 - -2.3
27,970 - +3.0
27,986 + -2.9
28,008 - +2.6
28,008 - -2.0
28,035 + +0.2
28,051 + -2.5
28,056 + +2.4
28,062 - +3.0
28,064 - +0.5
28,074 - -1.1
28,112 + -2.3
28,118 - -0.0
28,121 + +1.5
28,135 + +1.5
28,135 + -1.2
28,179 + +0.2
28,179 + +0.9

Or see this region's nucleotide sequence