Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18790 and BWI76_RS18795 are separated by 42 nucleotides BWI76_RS18795 and BWI76_RS18800 are separated by 1 nucleotides BWI76_RS18800 and BWI76_RS18805 are separated by 7 nucleotides BWI76_RS18805 and BWI76_RS18810 are separated by 404 nucleotides
BWI76_RS18790: BWI76_RS18790 - elongation factor G, at 3,894,811 to 3,896,913
_RS18790
BWI76_RS18795: BWI76_RS18795 - hypothetical protein, at 3,896,956 to 3,897,150
_RS18795
BWI76_RS18800: BWI76_RS18800 - transcriptional regulator, at 3,897,152 to 3,897,463
_RS18800
BWI76_RS18805: BWI76_RS18805 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 3,897,471 to 3,900,986
_RS18805
BWI76_RS18810: BWI76_RS18810 - nitrogenase iron protein, at 3,901,391 to 3,902,272
_RS18810
Position (kb)
3897
3898
3899
3900
3901 Strain fitness (log2 ratio)
-2
-1
0
1 at 3896.648 kb on - strand, within BWI76_RS18790 at 3896.658 kb on + strand, within BWI76_RS18790 at 3897.135 kb on - strand at 3897.268 kb on + strand, within BWI76_RS18800 at 3898.790 kb on + strand, within BWI76_RS18805 at 3898.859 kb on + strand, within BWI76_RS18805 at 3898.908 kb on - strand, within BWI76_RS18805 at 3899.166 kb on - strand, within BWI76_RS18805 at 3899.237 kb on + strand, within BWI76_RS18805 at 3899.479 kb on - strand, within BWI76_RS18805 at 3899.479 kb on - strand, within BWI76_RS18805 at 3899.511 kb on - strand, within BWI76_RS18805 at 3900.131 kb on - strand, within BWI76_RS18805 at 3900.193 kb on - strand, within BWI76_RS18805 at 3900.286 kb on - strand, within BWI76_RS18805 at 3900.319 kb on + strand, within BWI76_RS18805 at 3900.424 kb on + strand, within BWI76_RS18805 at 3900.495 kb on - strand, within BWI76_RS18805 at 3901.153 kb on + strand at 3901.185 kb on - strand at 3901.401 kb on - strand at 3901.456 kb on - strand at 3901.456 kb on - strand at 3901.791 kb on - strand, within BWI76_RS18810
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube remove 3,896,648 - BWI76_RS18790 0.87 +0.2 3,896,658 + BWI76_RS18790 0.88 -0.1 3,897,135 - -0.9 3,897,268 + BWI76_RS18800 0.37 -0.4 3,898,790 + BWI76_RS18805 0.38 -1.1 3,898,859 + BWI76_RS18805 0.39 -1.9 3,898,908 - BWI76_RS18805 0.41 -1.4 3,899,166 - BWI76_RS18805 0.48 -1.3 3,899,237 + BWI76_RS18805 0.50 -0.5 3,899,479 - BWI76_RS18805 0.57 -1.7 3,899,479 - BWI76_RS18805 0.57 +0.0 3,899,511 - BWI76_RS18805 0.58 -0.8 3,900,131 - BWI76_RS18805 0.76 -0.5 3,900,193 - BWI76_RS18805 0.77 -1.9 3,900,286 - BWI76_RS18805 0.80 -0.8 3,900,319 + BWI76_RS18805 0.81 -0.2 3,900,424 + BWI76_RS18805 0.84 -2.2 3,900,495 - BWI76_RS18805 0.86 -1.4 3,901,153 + -0.8 3,901,185 - -1.2 3,901,401 - +0.0 3,901,456 - -2.6 3,901,456 - +0.2 3,901,791 - BWI76_RS18810 0.45 -0.1
Or see this region's nucleotide sequence