Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10565

Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10560 and BWI76_RS10565 are separated by 168 nucleotidesBWI76_RS10565 and BWI76_RS10570 are separated by 214 nucleotides BWI76_RS10560: BWI76_RS10560 - gamma-glutamyltransferase, at 2,230,064 to 2,231,647 _RS10560 BWI76_RS10565: BWI76_RS10565 - sugar isomerase, at 2,231,816 to 2,232,655 _RS10565 BWI76_RS10570: BWI76_RS10570 - cysteine ABC transporter substrate-binding protein, at 2,232,870 to 2,233,655 _RS10570 Position (kb) 2231 2232 2233Strain fitness (log2 ratio) -2 -1 0 1at 2230.907 kb on - strand, within BWI76_RS10560at 2230.999 kb on + strand, within BWI76_RS10560at 2231.062 kb on + strand, within BWI76_RS10560at 2231.079 kb on + strand, within BWI76_RS10560at 2231.594 kb on + strandat 2231.926 kb on - strand, within BWI76_RS10565at 2232.085 kb on - strand, within BWI76_RS10565at 2232.153 kb on + strand, within BWI76_RS10565at 2232.155 kb on - strand, within BWI76_RS10565at 2232.228 kb on - strand, within BWI76_RS10565at 2232.320 kb on + strand, within BWI76_RS10565at 2232.893 kb on + strandat 2232.893 kb on + strandat 2233.032 kb on - strand, within BWI76_RS10570at 2233.157 kb on - strand, within BWI76_RS10570at 2233.221 kb on - strand, within BWI76_RS10570at 2233.384 kb on - strand, within BWI76_RS10570

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube
remove
2,230,907 - BWI76_RS10560 0.53 +0.3
2,230,999 + BWI76_RS10560 0.59 +0.8
2,231,062 + BWI76_RS10560 0.63 +0.1
2,231,079 + BWI76_RS10560 0.64 -1.4
2,231,594 + -0.1
2,231,926 - BWI76_RS10565 0.13 -0.9
2,232,085 - BWI76_RS10565 0.32 -1.0
2,232,153 + BWI76_RS10565 0.40 -1.9
2,232,155 - BWI76_RS10565 0.40 -1.6
2,232,228 - BWI76_RS10565 0.49 -0.3
2,232,320 + BWI76_RS10565 0.60 -1.1
2,232,893 + +0.5
2,232,893 + +0.1
2,233,032 - BWI76_RS10570 0.21 +0.4
2,233,157 - BWI76_RS10570 0.37 +1.0
2,233,221 - BWI76_RS10570 0.45 -1.1
2,233,384 - BWI76_RS10570 0.65 -0.2

Or see this region's nucleotide sequence