Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07380

Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07375 and BWI76_RS07380 are separated by 37 nucleotidesBWI76_RS07380 and BWI76_RS07385 are separated by 127 nucleotides BWI76_RS07375: BWI76_RS07375 - dehydrogenase, at 1,556,124 to 1,557,275 _RS07375 BWI76_RS07380: BWI76_RS07380 - hypothetical protein, at 1,557,313 to 1,557,729 _RS07380 BWI76_RS07385: BWI76_RS07385 - short-chain dehydrogenase/reductase SDR, at 1,557,857 to 1,558,606 _RS07385 Position (kb) 1557 1558Strain fitness (log2 ratio) -2 -1 0 1at 1556.322 kb on + strand, within BWI76_RS07375at 1556.413 kb on + strand, within BWI76_RS07375at 1556.477 kb on - strand, within BWI76_RS07375at 1556.484 kb on - strand, within BWI76_RS07375at 1556.641 kb on - strand, within BWI76_RS07375at 1556.690 kb on + strand, within BWI76_RS07375at 1557.105 kb on - strand, within BWI76_RS07375at 1557.318 kb on - strandat 1557.318 kb on - strandat 1557.344 kb on + strandat 1557.362 kb on - strand, within BWI76_RS07380at 1557.482 kb on - strand, within BWI76_RS07380at 1557.767 kb on - strandat 1557.772 kb on + strandat 1557.811 kb on - strandat 1557.816 kb on + strandat 1557.824 kb on - strandat 1557.939 kb on + strandat 1558.175 kb on + strand, within BWI76_RS07385at 1558.394 kb on - strand, within BWI76_RS07385

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube
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1,556,322 + BWI76_RS07375 0.17 -0.1
1,556,413 + BWI76_RS07375 0.25 -0.3
1,556,477 - BWI76_RS07375 0.31 -0.3
1,556,484 - BWI76_RS07375 0.31 +0.2
1,556,641 - BWI76_RS07375 0.45 +0.1
1,556,690 + BWI76_RS07375 0.49 +0.2
1,557,105 - BWI76_RS07375 0.85 -0.5
1,557,318 - +0.0
1,557,318 - +0.8
1,557,344 + -0.4
1,557,362 - BWI76_RS07380 0.12 -2.6
1,557,482 - BWI76_RS07380 0.41 -0.3
1,557,767 - -0.4
1,557,772 + -0.9
1,557,811 - -0.0
1,557,816 + +0.2
1,557,824 - +0.2
1,557,939 + +1.3
1,558,175 + BWI76_RS07385 0.42 +0.5
1,558,394 - BWI76_RS07385 0.72 -0.1

Or see this region's nucleotide sequence