Experiment: BHIS with Rifampicin 0.0000244140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4379 and BT4380 are separated by 44 nucleotides BT4380 and BT4381 overlap by 11 nucleotides BT4381 and BT4382 are separated by 21 nucleotides
BT4379: BT4379 - putative oxalate:formate antiporter (NCBI ptt file), at 5,772,481 to 5,773,869
BT4379
BT4380: BT4380 - conserved hypothetical protein (NCBI ptt file), at 5,773,914 to 5,774,261
BT4380
BT4381: BT4381 - hypothetical protein (NCBI ptt file), at 5,774,251 to 5,774,538
BT4381
BT4382: BT4382 - hypothetical protein (NCBI ptt file), at 5,774,560 to 5,775,624
BT4382
Position (kb) 5774
5775 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5773.272 kb on - strand, within BT4379 at 5773.272 kb on - strand, within BT4379 at 5773.325 kb on + strand, within BT4379 at 5773.503 kb on + strand, within BT4379 at 5773.512 kb on + strand, within BT4379 at 5773.512 kb on + strand, within BT4379 at 5773.513 kb on - strand, within BT4379 at 5773.514 kb on + strand, within BT4379 at 5773.514 kb on + strand, within BT4379 at 5773.515 kb on - strand, within BT4379 at 5773.515 kb on - strand, within BT4379 at 5773.741 kb on + strand at 5773.747 kb on + strand at 5773.749 kb on + strand at 5773.785 kb on - strand at 5773.878 kb on + strand at 5773.878 kb on + strand at 5773.878 kb on + strand at 5773.878 kb on + strand at 5773.879 kb on - strand at 5773.880 kb on + strand at 5773.897 kb on + strand at 5773.951 kb on + strand, within BT4380 at 5773.951 kb on + strand, within BT4380 at 5773.952 kb on - strand, within BT4380 at 5773.970 kb on + strand, within BT4380 at 5773.997 kb on + strand, within BT4380 at 5773.998 kb on - strand, within BT4380 at 5774.187 kb on + strand, within BT4380 at 5774.222 kb on - strand, within BT4380 at 5774.237 kb on + strand at 5774.293 kb on + strand, within BT4381 at 5774.326 kb on + strand, within BT4381 at 5774.333 kb on + strand, within BT4381 at 5774.433 kb on + strand, within BT4381 at 5774.443 kb on + strand, within BT4381 at 5774.506 kb on + strand, within BT4381 at 5774.507 kb on - strand, within BT4381 at 5774.507 kb on - strand, within BT4381 at 5774.507 kb on - strand, within BT4381 at 5774.507 kb on - strand, within BT4381 at 5774.562 kb on - strand at 5774.577 kb on + strand at 5774.665 kb on + strand at 5774.666 kb on - strand at 5774.755 kb on - strand, within BT4382 at 5774.838 kb on - strand, within BT4382 at 5774.873 kb on - strand, within BT4382 at 5774.943 kb on + strand, within BT4382 at 5775.054 kb on + strand, within BT4382 at 5775.055 kb on - strand, within BT4382 at 5775.077 kb on - strand, within BT4382 at 5775.088 kb on - strand, within BT4382 at 5775.102 kb on + strand, within BT4382 at 5775.238 kb on - strand, within BT4382 at 5775.484 kb on + strand, within BT4382
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Rifampicin 0.0000244140625 mM remove 5,773,272 - BT4379 0.57 -2.3 5,773,272 - BT4379 0.57 -1.0 5,773,325 + BT4379 0.61 +0.0 5,773,503 + BT4379 0.74 -1.6 5,773,512 + BT4379 0.74 -2.0 5,773,512 + BT4379 0.74 -3.8 5,773,513 - BT4379 0.74 -2.0 5,773,514 + BT4379 0.74 -1.8 5,773,514 + BT4379 0.74 +0.4 5,773,515 - BT4379 0.74 -0.6 5,773,515 - BT4379 0.74 -3.1 5,773,741 + -1.4 5,773,747 + +0.0 5,773,749 + -2.0 5,773,785 - +0.0 5,773,878 + -3.1 5,773,878 + -3.6 5,773,878 + -2.8 5,773,878 + +0.0 5,773,879 - +1.6 5,773,880 + -2.3 5,773,897 + -1.6 5,773,951 + BT4380 0.11 -2.0 5,773,951 + BT4380 0.11 -1.0 5,773,952 - BT4380 0.11 -1.6 5,773,970 + BT4380 0.16 -0.6 5,773,997 + BT4380 0.24 -1.3 5,773,998 - BT4380 0.24 -1.6 5,774,187 + BT4380 0.78 -0.8 5,774,222 - BT4380 0.89 -0.7 5,774,237 + -0.6 5,774,293 + BT4381 0.15 -1.6 5,774,326 + BT4381 0.26 -0.3 5,774,333 + BT4381 0.28 +0.0 5,774,433 + BT4381 0.63 -2.3 5,774,443 + BT4381 0.67 -2.6 5,774,506 + BT4381 0.89 -4.6 5,774,507 - BT4381 0.89 -2.1 5,774,507 - BT4381 0.89 -1.7 5,774,507 - BT4381 0.89 +0.0 5,774,507 - BT4381 0.89 -2.0 5,774,562 - -1.8 5,774,577 + -1.3 5,774,665 + -1.0 5,774,666 - -1.4 5,774,755 - BT4382 0.18 -1.5 5,774,838 - BT4382 0.26 -1.8 5,774,873 - BT4382 0.29 -1.0 5,774,943 + BT4382 0.36 -2.0 5,775,054 + BT4382 0.46 -1.5 5,775,055 - BT4382 0.46 -2.3 5,775,077 - BT4382 0.49 -1.0 5,775,088 - BT4382 0.50 -0.4 5,775,102 + BT4382 0.51 +0.0 5,775,238 - BT4382 0.64 +0.0 5,775,484 + BT4382 0.87 +0.6
Or see this region's nucleotide sequence