Experiment: BHIS with Rifampicin 0.0000244140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4316 and BT4317 are separated by 26 nucleotides BT4317 and BT4318 are separated by 42 nucleotides BT4318 and BT4319 are separated by 50 nucleotides
BT4316: BT4316 - conserved hypothetical protein (NCBI ptt file), at 5,685,646 to 5,686,530
BT4316
BT4317: BT4317 - putative lipoprotein protein (NCBI ptt file), at 5,686,557 to 5,687,069
BT4317
BT4318: BT4318 - ATP-binding protein (NCBI ptt file), at 5,687,112 to 5,687,816
BT4318
BT4319: BT4319 - hypothetical protein (NCBI ptt file), at 5,687,867 to 5,689,357
BT4319
Position (kb) 5687
5688 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5686.119 kb on - strand, within BT4316 at 5686.246 kb on - strand, within BT4316 at 5686.268 kb on - strand, within BT4316 at 5686.337 kb on + strand, within BT4316 at 5686.427 kb on + strand, within BT4316 at 5686.428 kb on - strand, within BT4316 at 5686.428 kb on - strand, within BT4316 at 5686.441 kb on - strand, within BT4316 at 5686.456 kb on + strand at 5686.492 kb on + strand at 5686.492 kb on + strand at 5686.501 kb on - strand at 5686.537 kb on - strand at 5686.669 kb on + strand, within BT4317 at 5686.669 kb on + strand, within BT4317 at 5686.670 kb on - strand, within BT4317 at 5686.803 kb on - strand, within BT4317 at 5686.808 kb on - strand, within BT4317 at 5686.809 kb on + strand, within BT4317 at 5686.810 kb on - strand, within BT4317 at 5686.934 kb on + strand, within BT4317 at 5687.049 kb on + strand at 5687.101 kb on + strand at 5687.108 kb on - strand at 5687.121 kb on + strand at 5687.172 kb on - strand at 5687.220 kb on + strand, within BT4318 at 5687.226 kb on + strand, within BT4318 at 5687.406 kb on - strand, within BT4318 at 5687.424 kb on - strand, within BT4318 at 5687.540 kb on - strand, within BT4318 at 5687.558 kb on - strand, within BT4318 at 5687.563 kb on - strand, within BT4318 at 5687.563 kb on - strand, within BT4318 at 5687.825 kb on + strand at 5687.860 kb on - strand at 5688.034 kb on - strand, within BT4319 at 5688.141 kb on + strand, within BT4319 at 5688.172 kb on + strand, within BT4319 at 5688.186 kb on + strand, within BT4319 at 5688.224 kb on - strand, within BT4319 at 5688.279 kb on + strand, within BT4319 at 5688.279 kb on + strand, within BT4319 at 5688.284 kb on - strand, within BT4319 at 5688.332 kb on + strand, within BT4319 at 5688.405 kb on + strand, within BT4319 at 5688.405 kb on + strand, within BT4319 at 5688.415 kb on + strand, within BT4319 at 5688.422 kb on - strand, within BT4319 at 5688.553 kb on + strand, within BT4319 at 5688.556 kb on - strand, within BT4319 at 5688.556 kb on - strand, within BT4319 at 5688.680 kb on + strand, within BT4319 at 5688.681 kb on - strand, within BT4319 at 5688.690 kb on - strand, within BT4319 at 5688.733 kb on + strand, within BT4319
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Rifampicin 0.0000244140625 mM remove 5,686,119 - BT4316 0.53 -2.3 5,686,246 - BT4316 0.68 +0.0 5,686,268 - BT4316 0.70 -1.0 5,686,337 + BT4316 0.78 -2.0 5,686,427 + BT4316 0.88 -1.4 5,686,428 - BT4316 0.88 +1.0 5,686,428 - BT4316 0.88 -0.6 5,686,441 - BT4316 0.90 -1.0 5,686,456 + -1.2 5,686,492 + +1.6 5,686,492 + +0.4 5,686,501 - +0.0 5,686,537 - -0.6 5,686,669 + BT4317 0.22 -0.6 5,686,669 + BT4317 0.22 -2.0 5,686,670 - BT4317 0.22 +0.0 5,686,803 - BT4317 0.48 -2.0 5,686,808 - BT4317 0.49 -0.8 5,686,809 + BT4317 0.49 -0.6 5,686,810 - BT4317 0.49 +1.0 5,686,934 + BT4317 0.73 -3.4 5,687,049 + +0.0 5,687,101 + +1.6 5,687,108 - -1.0 5,687,121 + -2.2 5,687,172 - +0.6 5,687,220 + BT4318 0.15 +0.0 5,687,226 + BT4318 0.16 -0.6 5,687,406 - BT4318 0.42 +0.0 5,687,424 - BT4318 0.44 -3.0 5,687,540 - BT4318 0.61 -3.1 5,687,558 - BT4318 0.63 -2.4 5,687,563 - BT4318 0.64 -2.8 5,687,563 - BT4318 0.64 -1.0 5,687,825 + -0.4 5,687,860 - -3.4 5,688,034 - BT4319 0.11 -2.6 5,688,141 + BT4319 0.18 -0.6 5,688,172 + BT4319 0.20 -2.3 5,688,186 + BT4319 0.21 -0.7 5,688,224 - BT4319 0.24 -1.9 5,688,279 + BT4319 0.28 -1.6 5,688,279 + BT4319 0.28 -1.6 5,688,284 - BT4319 0.28 +0.0 5,688,332 + BT4319 0.31 +0.0 5,688,405 + BT4319 0.36 -2.3 5,688,405 + BT4319 0.36 -2.0 5,688,415 + BT4319 0.37 -2.0 5,688,422 - BT4319 0.37 -0.6 5,688,553 + BT4319 0.46 -1.2 5,688,556 - BT4319 0.46 -2.0 5,688,556 - BT4319 0.46 -2.5 5,688,680 + BT4319 0.55 +0.0 5,688,681 - BT4319 0.55 +0.8 5,688,690 - BT4319 0.55 -2.0 5,688,733 + BT4319 0.58 -2.3
Or see this region's nucleotide sequence