Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17700

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS17695 and BBR_RS17700 are separated by 1 nucleotidesBBR_RS17700 and BBR_RS17705 are separated by 38 nucleotidesBBR_RS17705 and BBR_RS17710 are separated by 3 nucleotides BBR_RS17695: BBR_RS17695 - type I-C CRISPR-associated endonuclease Cas1, at 1,749,144 to 1,750,175 _RS17695 BBR_RS17700: BBR_RS17700 - CRISPR-associated protein Cas4, at 1,750,177 to 1,750,866 _RS17700 BBR_RS17705: BBR_RS17705 - type I-C CRISPR-associated protein Cas7/Csd2, at 1,750,905 to 1,751,756 _RS17705 BBR_RS17710: BBR_RS17710 - CRISPR-associated protein, at 1,751,760 to 1,753,718 _RS17710 Position (kb) 1750 1751Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1749.201 kb on - strandat 1749.217 kb on + strandat 1749.227 kb on - strandat 1749.235 kb on - strandat 1749.313 kb on - strand, within BBR_RS17695at 1749.330 kb on - strand, within BBR_RS17695at 1749.364 kb on + strand, within BBR_RS17695at 1749.372 kb on - strand, within BBR_RS17695at 1749.379 kb on + strand, within BBR_RS17695at 1749.382 kb on - strand, within BBR_RS17695at 1749.382 kb on - strand, within BBR_RS17695at 1749.387 kb on - strand, within BBR_RS17695at 1749.472 kb on - strand, within BBR_RS17695at 1749.510 kb on + strand, within BBR_RS17695at 1749.516 kb on - strand, within BBR_RS17695at 1749.518 kb on - strand, within BBR_RS17695at 1749.566 kb on + strand, within BBR_RS17695at 1749.574 kb on - strand, within BBR_RS17695at 1749.576 kb on + strand, within BBR_RS17695at 1749.584 kb on - strand, within BBR_RS17695at 1749.584 kb on - strand, within BBR_RS17695at 1749.584 kb on - strand, within BBR_RS17695at 1749.584 kb on - strand, within BBR_RS17695at 1749.584 kb on - strand, within BBR_RS17695at 1749.595 kb on - strand, within BBR_RS17695at 1749.669 kb on + strand, within BBR_RS17695at 1749.675 kb on + strand, within BBR_RS17695at 1749.685 kb on - strand, within BBR_RS17695at 1749.685 kb on - strand, within BBR_RS17695at 1749.695 kb on + strand, within BBR_RS17695at 1749.737 kb on - strand, within BBR_RS17695at 1749.760 kb on - strand, within BBR_RS17695at 1749.777 kb on - strand, within BBR_RS17695at 1749.789 kb on + strand, within BBR_RS17695at 1749.789 kb on + strand, within BBR_RS17695at 1749.793 kb on + strand, within BBR_RS17695at 1749.801 kb on - strand, within BBR_RS17695at 1749.822 kb on + strand, within BBR_RS17695at 1749.830 kb on - strand, within BBR_RS17695at 1749.873 kb on - strand, within BBR_RS17695at 1749.879 kb on - strand, within BBR_RS17695at 1749.914 kb on + strand, within BBR_RS17695at 1749.935 kb on + strand, within BBR_RS17695at 1749.943 kb on - strand, within BBR_RS17695at 1749.946 kb on - strand, within BBR_RS17695at 1750.055 kb on - strand, within BBR_RS17695at 1750.091 kb on - strandat 1750.091 kb on - strandat 1750.128 kb on + strandat 1750.128 kb on + strandat 1750.128 kb on + strandat 1750.136 kb on - strandat 1750.148 kb on + strandat 1750.164 kb on - strandat 1750.191 kb on + strandat 1750.192 kb on + strandat 1750.200 kb on - strandat 1750.203 kb on + strandat 1750.269 kb on - strand, within BBR_RS17700at 1750.285 kb on - strand, within BBR_RS17700at 1750.371 kb on - strand, within BBR_RS17700at 1750.373 kb on + strand, within BBR_RS17700at 1750.453 kb on - strand, within BBR_RS17700at 1750.481 kb on + strand, within BBR_RS17700at 1750.488 kb on + strand, within BBR_RS17700at 1750.506 kb on - strand, within BBR_RS17700at 1750.541 kb on + strand, within BBR_RS17700at 1750.541 kb on + strand, within BBR_RS17700at 1750.541 kb on - strand, within BBR_RS17700at 1750.549 kb on - strand, within BBR_RS17700at 1750.600 kb on + strand, within BBR_RS17700at 1750.648 kb on + strand, within BBR_RS17700at 1750.696 kb on + strand, within BBR_RS17700at 1750.719 kb on + strand, within BBR_RS17700at 1750.719 kb on + strand, within BBR_RS17700at 1750.737 kb on - strand, within BBR_RS17700at 1750.746 kb on - strand, within BBR_RS17700at 1750.771 kb on + strand, within BBR_RS17700at 1750.774 kb on + strand, within BBR_RS17700at 1750.801 kb on + strandat 1750.920 kb on - strandat 1750.930 kb on - strandat 1750.932 kb on - strandat 1751.000 kb on - strand, within BBR_RS17705at 1751.060 kb on + strand, within BBR_RS17705at 1751.120 kb on - strand, within BBR_RS17705at 1751.185 kb on - strand, within BBR_RS17705at 1751.196 kb on + strand, within BBR_RS17705at 1751.196 kb on + strand, within BBR_RS17705at 1751.198 kb on + strand, within BBR_RS17705at 1751.204 kb on - strand, within BBR_RS17705at 1751.209 kb on + strand, within BBR_RS17705at 1751.233 kb on - strand, within BBR_RS17705at 1751.233 kb on - strand, within BBR_RS17705at 1751.318 kb on + strand, within BBR_RS17705at 1751.318 kb on + strand, within BBR_RS17705at 1751.326 kb on - strand, within BBR_RS17705at 1751.326 kb on - strand, within BBR_RS17705at 1751.362 kb on + strand, within BBR_RS17705at 1751.368 kb on - strand, within BBR_RS17705at 1751.463 kb on - strand, within BBR_RS17705at 1751.463 kb on - strand, within BBR_RS17705at 1751.468 kb on - strand, within BBR_RS17705at 1751.468 kb on - strand, within BBR_RS17705at 1751.513 kb on - strand, within BBR_RS17705at 1751.546 kb on + strand, within BBR_RS17705at 1751.556 kb on + strand, within BBR_RS17705at 1751.563 kb on - strand, within BBR_RS17705at 1751.567 kb on + strand, within BBR_RS17705at 1751.575 kb on - strand, within BBR_RS17705at 1751.646 kb on + strand, within BBR_RS17705at 1751.648 kb on + strand, within BBR_RS17705at 1751.654 kb on - strand, within BBR_RS17705at 1751.656 kb on - strand, within BBR_RS17705at 1751.666 kb on - strand, within BBR_RS17705at 1751.726 kb on - strandat 1751.767 kb on + strandat 1751.781 kb on + strandat 1751.788 kb on + strandat 1751.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day3
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1,749,201 - -0.8
1,749,217 + -1.7
1,749,227 - -2.7
1,749,235 - +1.8
1,749,313 - BBR_RS17695 0.16 -2.7
1,749,330 - BBR_RS17695 0.18 -0.5
1,749,364 + BBR_RS17695 0.21 -0.1
1,749,372 - BBR_RS17695 0.22 +0.5
1,749,379 + BBR_RS17695 0.23 +0.2
1,749,382 - BBR_RS17695 0.23 +1.5
1,749,382 - BBR_RS17695 0.23 -0.1
1,749,387 - BBR_RS17695 0.24 -3.4
1,749,472 - BBR_RS17695 0.32 -0.5
1,749,510 + BBR_RS17695 0.35 -0.7
1,749,516 - BBR_RS17695 0.36 +1.8
1,749,518 - BBR_RS17695 0.36 +1.5
1,749,566 + BBR_RS17695 0.41 +2.0
1,749,574 - BBR_RS17695 0.42 +3.3
1,749,576 + BBR_RS17695 0.42 -2.1
1,749,584 - BBR_RS17695 0.43 +1.5
1,749,584 - BBR_RS17695 0.43 -2.1
1,749,584 - BBR_RS17695 0.43 -2.4
1,749,584 - BBR_RS17695 0.43 +1.2
1,749,584 - BBR_RS17695 0.43 -1.8
1,749,595 - BBR_RS17695 0.44 -4.1
1,749,669 + BBR_RS17695 0.51 -2.5
1,749,675 + BBR_RS17695 0.51 +1.7
1,749,685 - BBR_RS17695 0.52 -2.3
1,749,685 - BBR_RS17695 0.52 +0.6
1,749,695 + BBR_RS17695 0.53 -2.0
1,749,737 - BBR_RS17695 0.57 +0.7
1,749,760 - BBR_RS17695 0.60 -0.7
1,749,777 - BBR_RS17695 0.61 +0.4
1,749,789 + BBR_RS17695 0.62 +1.1
1,749,789 + BBR_RS17695 0.62 -2.0
1,749,793 + BBR_RS17695 0.63 +0.9
1,749,801 - BBR_RS17695 0.64 +0.1
1,749,822 + BBR_RS17695 0.66 -0.1
1,749,830 - BBR_RS17695 0.66 +2.1
1,749,873 - BBR_RS17695 0.71 -3.0
1,749,879 - BBR_RS17695 0.71 -0.1
1,749,914 + BBR_RS17695 0.75 -1.7
1,749,935 + BBR_RS17695 0.77 -1.9
1,749,943 - BBR_RS17695 0.77 +0.4
1,749,946 - BBR_RS17695 0.78 +2.3
1,750,055 - BBR_RS17695 0.88 +0.2
1,750,091 - +0.2
1,750,091 - -0.3
1,750,128 + +1.2
1,750,128 + -1.0
1,750,128 + +0.6
1,750,136 - -2.1
1,750,148 + +2.1
1,750,164 - -0.4
1,750,191 + +0.3
1,750,192 + +1.0
1,750,200 - -0.8
1,750,203 + -2.0
1,750,269 - BBR_RS17700 0.13 -1.1
1,750,285 - BBR_RS17700 0.16 -1.2
1,750,371 - BBR_RS17700 0.28 -3.3
1,750,373 + BBR_RS17700 0.28 -1.5
1,750,453 - BBR_RS17700 0.40 +0.3
1,750,481 + BBR_RS17700 0.44 +1.2
1,750,488 + BBR_RS17700 0.45 -1.8
1,750,506 - BBR_RS17700 0.48 -3.2
1,750,541 + BBR_RS17700 0.53 -2.0
1,750,541 + BBR_RS17700 0.53 +1.1
1,750,541 - BBR_RS17700 0.53 +2.6
1,750,549 - BBR_RS17700 0.54 -3.3
1,750,600 + BBR_RS17700 0.61 -1.6
1,750,648 + BBR_RS17700 0.68 +1.2
1,750,696 + BBR_RS17700 0.75 -1.0
1,750,719 + BBR_RS17700 0.79 +0.5
1,750,719 + BBR_RS17700 0.79 -0.3
1,750,737 - BBR_RS17700 0.81 -0.4
1,750,746 - BBR_RS17700 0.82 -2.2
1,750,771 + BBR_RS17700 0.86 -0.4
1,750,774 + BBR_RS17700 0.87 -1.6
1,750,801 + -2.5
1,750,920 - +2.8
1,750,930 - +1.2
1,750,932 - -2.9
1,751,000 - BBR_RS17705 0.11 +1.0
1,751,060 + BBR_RS17705 0.18 +1.4
1,751,120 - BBR_RS17705 0.25 +1.8
1,751,185 - BBR_RS17705 0.33 -1.9
1,751,196 + BBR_RS17705 0.34 -2.2
1,751,196 + BBR_RS17705 0.34 -1.4
1,751,198 + BBR_RS17705 0.34 -0.8
1,751,204 - BBR_RS17705 0.35 -2.6
1,751,209 + BBR_RS17705 0.36 -1.6
1,751,233 - BBR_RS17705 0.38 -1.9
1,751,233 - BBR_RS17705 0.38 +1.6
1,751,318 + BBR_RS17705 0.48 +0.1
1,751,318 + BBR_RS17705 0.48 +1.7
1,751,326 - BBR_RS17705 0.49 -0.8
1,751,326 - BBR_RS17705 0.49 +0.8
1,751,362 + BBR_RS17705 0.54 +1.5
1,751,368 - BBR_RS17705 0.54 -2.3
1,751,463 - BBR_RS17705 0.65 -0.6
1,751,463 - BBR_RS17705 0.65 +2.0
1,751,468 - BBR_RS17705 0.66 +1.5
1,751,468 - BBR_RS17705 0.66 +0.2
1,751,513 - BBR_RS17705 0.71 +2.4
1,751,546 + BBR_RS17705 0.75 -2.9
1,751,556 + BBR_RS17705 0.76 -2.1
1,751,563 - BBR_RS17705 0.77 -1.9
1,751,567 + BBR_RS17705 0.78 +0.7
1,751,575 - BBR_RS17705 0.79 +0.4
1,751,646 + BBR_RS17705 0.87 +2.3
1,751,648 + BBR_RS17705 0.87 +1.7
1,751,654 - BBR_RS17705 0.88 -3.7
1,751,656 - BBR_RS17705 0.88 +2.6
1,751,666 - BBR_RS17705 0.89 -0.4
1,751,726 - -2.0
1,751,767 + -0.2
1,751,781 + -2.0
1,751,788 + -1.8
1,751,789 - -2.3

Or see this region's nucleotide sequence