Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13205

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13195 and BBR_RS13200 are separated by 26 nucleotidesBBR_RS13200 and BBR_RS13205 are separated by 57 nucleotidesBBR_RS13205 and BBR_RS13210 are separated by 80 nucleotides BBR_RS13195: BBR_RS13195 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 736,662 to 737,537 _RS13195 BBR_RS13200: BBR_RS13200 - pyridoxal 5'-phosphate synthase glutaminase subunit PdxT, at 737,564 to 738,202 _RS13200 BBR_RS13205: BBR_RS13205 - PLP-dependent aminotransferase family protein, at 738,260 to 739,783 _RS13205 BBR_RS13210: BBR_RS13210 - anion transporter, at 739,864 to 741,042 _RS13210 Position (kb) 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 737.277 kb on + strand, within BBR_RS13195at 737.298 kb on + strand, within BBR_RS13195at 737.335 kb on - strand, within BBR_RS13195at 737.361 kb on + strand, within BBR_RS13195at 737.370 kb on + strand, within BBR_RS13195at 737.437 kb on + strand, within BBR_RS13195at 737.437 kb on + strand, within BBR_RS13195at 737.445 kb on - strand, within BBR_RS13195at 737.513 kb on + strandat 737.547 kb on + strandat 737.557 kb on + strandat 737.560 kb on - strandat 737.584 kb on - strandat 737.616 kb on - strandat 737.642 kb on - strand, within BBR_RS13200at 737.653 kb on - strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.838 kb on - strand, within BBR_RS13200at 737.928 kb on + strand, within BBR_RS13200at 737.931 kb on + strand, within BBR_RS13200at 737.948 kb on + strand, within BBR_RS13200at 737.948 kb on + strand, within BBR_RS13200at 737.955 kb on + strand, within BBR_RS13200at 737.955 kb on + strand, within BBR_RS13200at 737.955 kb on - strand, within BBR_RS13200at 737.963 kb on - strand, within BBR_RS13200at 737.963 kb on - strand, within BBR_RS13200at 738.006 kb on + strand, within BBR_RS13200at 738.033 kb on - strand, within BBR_RS13200at 738.035 kb on + strand, within BBR_RS13200at 738.035 kb on + strand, within BBR_RS13200at 738.077 kb on - strand, within BBR_RS13200at 738.091 kb on - strand, within BBR_RS13200at 738.091 kb on - strand, within BBR_RS13200at 738.131 kb on + strand, within BBR_RS13200at 738.223 kb on - strandat 738.223 kb on - strandat 738.226 kb on + strandat 738.255 kb on + strandat 738.278 kb on - strandat 738.288 kb on - strandat 738.288 kb on - strandat 738.293 kb on - strandat 738.296 kb on - strandat 738.312 kb on + strandat 738.312 kb on + strandat 738.381 kb on + strandat 738.401 kb on - strandat 738.409 kb on - strandat 738.422 kb on - strand, within BBR_RS13205at 738.424 kb on - strand, within BBR_RS13205at 738.431 kb on - strand, within BBR_RS13205at 738.517 kb on + strand, within BBR_RS13205at 738.520 kb on - strand, within BBR_RS13205at 738.539 kb on - strand, within BBR_RS13205at 738.587 kb on + strand, within BBR_RS13205at 738.595 kb on - strand, within BBR_RS13205at 738.649 kb on - strand, within BBR_RS13205at 738.740 kb on - strand, within BBR_RS13205at 738.740 kb on - strand, within BBR_RS13205at 738.828 kb on - strand, within BBR_RS13205at 738.836 kb on + strand, within BBR_RS13205at 738.860 kb on - strand, within BBR_RS13205at 738.879 kb on - strand, within BBR_RS13205at 738.879 kb on - strand, within BBR_RS13205at 738.937 kb on - strand, within BBR_RS13205at 739.024 kb on - strand, within BBR_RS13205at 739.075 kb on + strand, within BBR_RS13205at 739.083 kb on - strand, within BBR_RS13205at 739.083 kb on - strand, within BBR_RS13205at 739.085 kb on + strand, within BBR_RS13205at 739.093 kb on - strand, within BBR_RS13205at 739.093 kb on - strand, within BBR_RS13205at 739.176 kb on - strand, within BBR_RS13205at 739.212 kb on - strand, within BBR_RS13205at 739.229 kb on - strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.253 kb on + strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.302 kb on + strand, within BBR_RS13205at 739.302 kb on - strand, within BBR_RS13205at 739.308 kb on + strand, within BBR_RS13205at 739.315 kb on + strand, within BBR_RS13205at 739.316 kb on - strand, within BBR_RS13205at 739.321 kb on - strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.330 kb on + strand, within BBR_RS13205at 739.331 kb on + strand, within BBR_RS13205at 739.334 kb on - strand, within BBR_RS13205at 739.375 kb on - strand, within BBR_RS13205at 739.398 kb on - strand, within BBR_RS13205at 739.398 kb on - strand, within BBR_RS13205at 739.401 kb on + strand, within BBR_RS13205at 739.419 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.433 kb on + strand, within BBR_RS13205at 739.433 kb on + strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.500 kb on - strand, within BBR_RS13205at 739.523 kb on + strand, within BBR_RS13205at 739.537 kb on + strand, within BBR_RS13205at 739.537 kb on + strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.547 kb on + strand, within BBR_RS13205at 739.555 kb on - strand, within BBR_RS13205at 739.567 kb on - strand, within BBR_RS13205at 739.578 kb on + strand, within BBR_RS13205at 739.582 kb on + strand, within BBR_RS13205at 739.586 kb on - strand, within BBR_RS13205at 739.607 kb on - strand, within BBR_RS13205at 739.665 kb on - strandat 739.690 kb on - strandat 739.754 kb on + strandat 739.754 kb on + strandat 739.762 kb on - strandat 739.762 kb on - strandat 739.769 kb on + strandat 739.932 kb on + strandat 739.969 kb on + strandat 739.972 kb on + strandat 739.978 kb on + strandat 739.978 kb on + strandat 740.032 kb on + strand, within BBR_RS13210at 740.102 kb on - strand, within BBR_RS13210at 740.104 kb on + strand, within BBR_RS13210at 740.140 kb on + strand, within BBR_RS13210at 740.143 kb on - strand, within BBR_RS13210at 740.194 kb on - strand, within BBR_RS13210at 740.218 kb on + strand, within BBR_RS13210at 740.225 kb on - strand, within BBR_RS13210at 740.244 kb on + strand, within BBR_RS13210at 740.260 kb on + strand, within BBR_RS13210at 740.268 kb on - strand, within BBR_RS13210at 740.268 kb on - strand, within BBR_RS13210at 740.479 kb on + strand, within BBR_RS13210at 740.549 kb on - strand, within BBR_RS13210at 740.595 kb on + strand, within BBR_RS13210at 740.659 kb on + strand, within BBR_RS13210at 740.672 kb on - strand, within BBR_RS13210at 740.677 kb on + strand, within BBR_RS13210at 740.753 kb on - strand, within BBR_RS13210at 740.770 kb on - strand, within BBR_RS13210

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day3
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737,277 + BBR_RS13195 0.70 -2.9
737,298 + BBR_RS13195 0.73 -1.3
737,335 - BBR_RS13195 0.77 -2.6
737,361 + BBR_RS13195 0.80 +1.8
737,370 + BBR_RS13195 0.81 -2.4
737,437 + BBR_RS13195 0.88 -2.6
737,437 + BBR_RS13195 0.88 -1.6
737,445 - BBR_RS13195 0.89 +0.4
737,513 + +0.3
737,547 + +1.5
737,557 + -2.5
737,560 - -1.5
737,584 - +1.3
737,616 - +0.3
737,642 - BBR_RS13200 0.12 +1.3
737,653 - BBR_RS13200 0.14 -0.4
737,830 + BBR_RS13200 0.42 +1.0
737,830 + BBR_RS13200 0.42 +1.1
737,830 + BBR_RS13200 0.42 +0.9
737,830 + BBR_RS13200 0.42 +2.4
737,830 + BBR_RS13200 0.42 -1.3
737,830 + BBR_RS13200 0.42 +1.3
737,838 - BBR_RS13200 0.43 +0.1
737,928 + BBR_RS13200 0.57 -1.0
737,931 + BBR_RS13200 0.57 +0.9
737,948 + BBR_RS13200 0.60 +2.4
737,948 + BBR_RS13200 0.60 +0.9
737,955 + BBR_RS13200 0.61 +2.1
737,955 + BBR_RS13200 0.61 +2.1
737,955 - BBR_RS13200 0.61 -1.8
737,963 - BBR_RS13200 0.62 -1.8
737,963 - BBR_RS13200 0.62 +1.7
738,006 + BBR_RS13200 0.69 -0.7
738,033 - BBR_RS13200 0.73 -2.5
738,035 + BBR_RS13200 0.74 -2.2
738,035 + BBR_RS13200 0.74 -2.5
738,077 - BBR_RS13200 0.80 +1.0
738,091 - BBR_RS13200 0.82 -1.4
738,091 - BBR_RS13200 0.82 +1.5
738,131 + BBR_RS13200 0.89 +0.1
738,223 - -1.1
738,223 - +0.2
738,226 + -2.1
738,255 + +1.8
738,278 - -2.1
738,288 - +0.3
738,288 - -2.6
738,293 - +1.5
738,296 - +0.5
738,312 + -0.4
738,312 + +0.9
738,381 + +0.7
738,401 - +2.8
738,409 - +2.5
738,422 - BBR_RS13205 0.11 -2.8
738,424 - BBR_RS13205 0.11 +0.9
738,431 - BBR_RS13205 0.11 -2.2
738,517 + BBR_RS13205 0.17 -0.0
738,520 - BBR_RS13205 0.17 -2.4
738,539 - BBR_RS13205 0.18 +1.9
738,587 + BBR_RS13205 0.21 -0.2
738,595 - BBR_RS13205 0.22 -2.2
738,649 - BBR_RS13205 0.26 +1.5
738,740 - BBR_RS13205 0.31 +1.3
738,740 - BBR_RS13205 0.31 -1.2
738,828 - BBR_RS13205 0.37 -2.3
738,836 + BBR_RS13205 0.38 +1.2
738,860 - BBR_RS13205 0.39 +1.8
738,879 - BBR_RS13205 0.41 -0.4
738,879 - BBR_RS13205 0.41 -0.6
738,937 - BBR_RS13205 0.44 -1.9
739,024 - BBR_RS13205 0.50 -1.1
739,075 + BBR_RS13205 0.53 -1.0
739,083 - BBR_RS13205 0.54 +3.1
739,083 - BBR_RS13205 0.54 -2.0
739,085 + BBR_RS13205 0.54 +1.4
739,093 - BBR_RS13205 0.55 +0.9
739,093 - BBR_RS13205 0.55 +1.0
739,176 - BBR_RS13205 0.60 -2.6
739,212 - BBR_RS13205 0.62 +1.6
739,229 - BBR_RS13205 0.64 -2.2
739,236 + BBR_RS13205 0.64 -3.0
739,236 + BBR_RS13205 0.64 +1.4
739,236 + BBR_RS13205 0.64 -2.6
739,253 + BBR_RS13205 0.65 -2.0
739,254 - BBR_RS13205 0.65 -0.8
739,254 - BBR_RS13205 0.65 +0.2
739,254 - BBR_RS13205 0.65 -0.9
739,302 + BBR_RS13205 0.68 -2.6
739,302 - BBR_RS13205 0.68 -2.9
739,308 + BBR_RS13205 0.69 +1.6
739,315 + BBR_RS13205 0.69 +2.3
739,316 - BBR_RS13205 0.69 +2.3
739,321 - BBR_RS13205 0.70 -1.7
739,325 + BBR_RS13205 0.70 -2.1
739,325 + BBR_RS13205 0.70 +0.9
739,325 + BBR_RS13205 0.70 +1.5
739,330 + BBR_RS13205 0.70 -2.9
739,331 + BBR_RS13205 0.70 -1.8
739,334 - BBR_RS13205 0.70 +4.0
739,375 - BBR_RS13205 0.73 +1.2
739,398 - BBR_RS13205 0.75 +0.5
739,398 - BBR_RS13205 0.75 +0.6
739,401 + BBR_RS13205 0.75 +1.0
739,419 + BBR_RS13205 0.76 -0.5
739,429 + BBR_RS13205 0.77 +1.7
739,429 + BBR_RS13205 0.77 -2.0
739,429 + BBR_RS13205 0.77 -2.5
739,429 + BBR_RS13205 0.77 +0.9
739,433 + BBR_RS13205 0.77 -1.5
739,433 + BBR_RS13205 0.77 -1.9
739,437 - BBR_RS13205 0.77 -2.3
739,437 - BBR_RS13205 0.77 +2.1
739,437 - BBR_RS13205 0.77 +1.7
739,500 - BBR_RS13205 0.81 +1.0
739,523 + BBR_RS13205 0.83 +1.3
739,537 + BBR_RS13205 0.84 +0.8
739,537 + BBR_RS13205 0.84 -1.4
739,545 - BBR_RS13205 0.84 +1.7
739,545 - BBR_RS13205 0.84 +0.9
739,545 - BBR_RS13205 0.84 -1.4
739,545 - BBR_RS13205 0.84 +1.6
739,547 + BBR_RS13205 0.84 +3.2
739,555 - BBR_RS13205 0.85 -0.0
739,567 - BBR_RS13205 0.86 -3.7
739,578 + BBR_RS13205 0.86 +0.7
739,582 + BBR_RS13205 0.87 +1.7
739,586 - BBR_RS13205 0.87 +0.7
739,607 - BBR_RS13205 0.88 +1.0
739,665 - +0.9
739,690 - -0.2
739,754 + -2.1
739,754 + -1.6
739,762 - +0.9
739,762 - -1.6
739,769 + -0.7
739,932 + -1.4
739,969 + -0.9
739,972 + -2.6
739,978 + -1.1
739,978 + -3.2
740,032 + BBR_RS13210 0.14 -1.9
740,102 - BBR_RS13210 0.20 -2.9
740,104 + BBR_RS13210 0.20 -1.5
740,140 + BBR_RS13210 0.23 -1.5
740,143 - BBR_RS13210 0.24 -1.8
740,194 - BBR_RS13210 0.28 -1.9
740,218 + BBR_RS13210 0.30 -0.9
740,225 - BBR_RS13210 0.31 -1.0
740,244 + BBR_RS13210 0.32 -2.1
740,260 + BBR_RS13210 0.34 -2.9
740,268 - BBR_RS13210 0.34 -1.6
740,268 - BBR_RS13210 0.34 +1.2
740,479 + BBR_RS13210 0.52 +1.0
740,549 - BBR_RS13210 0.58 -2.9
740,595 + BBR_RS13210 0.62 -1.8
740,659 + BBR_RS13210 0.67 -0.9
740,672 - BBR_RS13210 0.69 +0.4
740,677 + BBR_RS13210 0.69 -3.1
740,753 - BBR_RS13210 0.75 -1.6
740,770 - BBR_RS13210 0.77 -1.5

Or see this region's nucleotide sequence